View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_10 (Length: 361)
Name: NF12347_low_10
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 10255230 - 10255558
Alignment:
| Q |
15 |
ctgtgacccgatccaacttcttctttattaaaccaacagtagcaccccaacactaacaccaccatatatccaattcttgataagccaactcctccat--- |
111 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
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| T |
10255230 |
ctgtgacccgatccatcttcttctttattaaaccaacagtagcaccccaacactaacaccaccatgt--ccaattcttcataagccaactcctccataat |
10255327 |
T |
|
| Q |
112 |
ttacaacagcatggcatcgtccagcagcactgggtccataccaattcaaaagtataaaacgaaaccaaacaataataacaacatggctcttctccagata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10255328 |
ttacaacagcatggcatcgtccagcagcactgggtccataccaattcaaaagtataaaacgaaaccaaacaataataacaacatggctcttctccatata |
10255427 |
T |
|
| Q |
212 |
tgttgttacataacaaatcaatgtttgggaacgaaatctgtgtcaaatctatatggttatgcctgattcaacaacactttaaccaaattccaaaactgcc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10255428 |
tgttgttacataacaaatcaatgtttgggaacgaaatctttgtcaaatctatatggttatgcctgattcaacaacactttaaccaaattccaaaactacc |
10255527 |
T |
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| Q |
312 |
atgttcgaaattatctagctatcgacgagag |
342 |
Q |
| |
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|||||||||||||||||| |||||||||||| |
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| T |
10255528 |
atgttcgaaattatctagttatcgacgagag |
10255558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 43 - 342
Target Start/End: Original strand, 27390769 - 27391066
Alignment:
| Q |
43 |
taaaccaacagtagcaccccaacactaacaccaccatatatccaattcttgataagccaactcctccatttacaacagcatggcatcgtccagcagcact |
142 |
Q |
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| T |
27390769 |
taaaccaacagtagcaccccaacactaacaccaccatgt--ccaattcttcataagccaactcctccatttccaacagcatggcatcgtccaacagcact |
27390866 |
T |
|
| Q |
143 |
gggtccataccaattcaaaagtataaaacgaaaccaaacaataataacaacatggctcttctccagatatgttgttacataacaaatcaatgtttgggaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27390867 |
gggtccataccaattcaaaagtataaaacgaaaccaaacaataataacaacatggctcttcttcagatatgttgttacataacaaatcaatgtttgggaa |
27390966 |
T |
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| Q |
243 |
cgaaatctgtgtcaaatctatatggttatgcctgattcaacaacactttaaccaaattccaaaactgccatgttcgaaattatctagctatcgacgagag |
342 |
Q |
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| T |
27390967 |
cgaaatatgtgtcaaatctatatggttatgcctgattcaacaacattttaaccaaattccaaaactaccgtgttcgaaattatctagttatcgacgagag |
27391066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 27354145 - 27354107
Alignment:
| Q |
153 |
caattcaaaagtataaaacgaaaccaaacaataataaca |
191 |
Q |
| |
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| T |
27354145 |
caattcaaaagtatataacgaaaccaaacaaaaataaca |
27354107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 25247393 - 25247450
Alignment:
| Q |
268 |
ttatgcctgattcaacaacactttaaccaaattccaaaactgccatgttcgaaattatc |
326 |
Q |
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| T |
25247393 |
ttatgcctgattcaacaaccctttaaccaaattacaaaactaccatgtt-gaaattatc |
25247450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 5021231 - 5021277
Alignment:
| Q |
277 |
attcaacaacactttaaccaaattccaaaactgccatgttcgaaatt |
323 |
Q |
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|||||||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
5021231 |
attcaacaacacttaaaccaaattccaaaactaccattgtcgaaatt |
5021277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 38490624 - 38490584
Alignment:
| Q |
268 |
ttatgcctgattcaacaacactttaaccaaattccaaaact |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38490624 |
ttatgcctgattcaacaaccctttaaccaaattccaaaact |
38490584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 32996607 - 32996647
Alignment:
| Q |
268 |
ttatgcctgattcaacaacactttaaccaaattccaaaact |
308 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
32996607 |
ttatgcctgattcaacaacattttaacctaattctaaaact |
32996647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 24549536 - 24549605
Alignment:
| Q |
239 |
ggaacgaaatctgtgtcaaatctatatggttatgcctgattcaacaacactttaaccaaattccaaaact |
308 |
Q |
| |
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|||||||||| ||||||| ||||| || |||||||||||||| |||||||||||| ||||| |||||| |
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| T |
24549536 |
ggaacgaaatttgtgtcagatctaattgtttatgcctgattcagcaacactttaacttaattctaaaact |
24549605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 24741410 - 24741471
Alignment:
| Q |
239 |
ggaacgaaatctgtgtcaaatctatatggttatgcctgattcaacaacactttaaccaaatt |
300 |
Q |
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|||||||||| |||| || ||||| || |||||||||||||||||||| ||||||| |||| |
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| T |
24741410 |
ggaacgaaatttgtgccagatctaattgtttatgcctgattcaacaacattttaacctaatt |
24741471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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