View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_11 (Length: 352)
Name: NF12347_low_11
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 14175527 - 14175208
Alignment:
| Q |
20 |
tagtctatgcttgattttatttttgaagaatctaaaattgattatagaggtatacgattgattctgacgtatttagatgtatccactcactttgaatttg |
119 |
Q |
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| T |
14175527 |
tagtctacgcttgattttatttttgaagaatctaaaattgattatagaagtataccattgattttgacgtgtttagatgtatccactcactttgaatttg |
14175428 |
T |
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| Q |
120 |
ttagtcactagaattgattttagagattgaatttgttagttccattcgcttataaccatattttactttaaaaagaacactcaattttgtataaacatat |
219 |
Q |
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| T |
14175427 |
ttagtcactataattgattttagagattgaatttgttagttctactcgcttataactatattttactttaaaaagaacactcaattttgtataaacatat |
14175328 |
T |
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| Q |
220 |
ccaaacataaatcattttacatttagctcatatttaattagaatcaattaaaatacattcattcaaaatcaattttgcaccgcataaccaaacacgcact |
319 |
Q |
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| T |
14175327 |
ccaaacataaatcattttacatttagctcatatttaattagaatcaattaaaatacattcattcaaaatcaattttgcaccgcataaccaaacacgcact |
14175228 |
T |
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| Q |
320 |
aatacttttgcttttcacag |
339 |
Q |
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|||||||||||||||||||| |
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| T |
14175227 |
aatacttttgcttttcacag |
14175208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 14172099 - 14172049
Alignment:
| Q |
20 |
tagtctatgcttgattttatttttgaagaatctaaaattgattatagaggt |
70 |
Q |
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| T |
14172099 |
tagtctatacttgattttatttttgaagattctaaaattgattctagaggt |
14172049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 14172011 - 14171948
Alignment:
| Q |
123 |
gtcactagaattgattttagagattgaatttgttagttccattcgcttataaccatattttact |
186 |
Q |
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| T |
14172011 |
gtcactagaattggttttaaacattgaatttgttagttctactcacttttaaacatattttact |
14171948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 19563825 - 19563760
Alignment:
| Q |
204 |
ttttgtataaacatatccaaacataaatcattttacatttagctcatatttaattagaatcaatta |
269 |
Q |
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|||| |||||| | || |||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
19563825 |
ttttatataaatacattcaaacataaatcattttacattcagctcatttttatccagaatcaatta |
19563760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 44439339 - 44439378
Alignment:
| Q |
210 |
ataaacatatccaaacataaatcattttacatttagctca |
249 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| |
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| T |
44439339 |
ataaacatatccaaacataaatcactttacatttaactca |
44439378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 411803 - 411840
Alignment:
| Q |
204 |
ttttgtataaacatatccaaacataaatcattttacat |
241 |
Q |
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|||| |||||||| |||||||||||||||||||||||| |
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| T |
411803 |
ttttatataaacacatccaaacataaatcattttacat |
411840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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