View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_13 (Length: 322)
Name: NF12347_low_13
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37289574 - 37289307
Alignment:
| Q |
1 |
taaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaaccaatcgtttcctttaactcgttggcttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
37289574 |
taaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaatcaatcatttcctttggctcgttggcttgc |
37289475 |
T |
|
| Q |
101 |
aaatcggcctatctgatctctgaaattattaccaaacaggtttggcaagcgtattgtaccatgagaaaacaacaaaacgaaatatcaataatcatgagca |
200 |
Q |
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|||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
37289474 |
aaatcggcctatctgatctccaaaatcattaccaaacaagtttgacaagcgtattgcaccctgagaaaacaacaaaacgaaacatcaataatcatgagca |
37289375 |
T |
|
| Q |
201 |
agaagatagcccgttcnnnnnnnnnngaaagaagcaattattgtaccttcaaaacaggaatggacgca |
268 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37289374 |
agaagatagcccgttcaaaaaaaaaaaaaagaagcaattattgtaccttcaaaacaggaatggacgca |
37289307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 13927735 - 13927521
Alignment:
| Q |
1 |
taaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaaccaatcgtttcctttaactcgttggcttgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
13927735 |
taaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcataacctaaaaataccaaaccaatcgtttcctttggctagttggcttgc |
13927636 |
T |
|
| Q |
101 |
aaatcggcctatctgatctctgaaattattaccaaacaggtttggcaagcgtattgtaccatgagaaaacaacaaaacgaaatatcaataatcatgagca |
200 |
Q |
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|||| || |||||||||||| ||||| |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13927635 |
aaattggtctatctgatctccgaaatcattaccaaacaggtttggcaagtgtatggcaccctgagaaaacaacaaaacgaaatatcaataatcatgagca |
13927536 |
T |
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| Q |
201 |
agaagatagcccgtt |
215 |
Q |
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||||||||||||||| |
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| T |
13927535 |
agaagatagcccgtt |
13927521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 6148047 - 6148011
Alignment:
| Q |
229 |
aagaagcaattattgtaccttcaaaacaggaatggac |
265 |
Q |
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| T |
6148047 |
aagaagcaattattgtgccttcgaaacaggaatggac |
6148011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50568492 - 50568556
Alignment:
| Q |
1 |
taaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaata |
65 |
Q |
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|||||||||||| || | |||||||||| ||||||||| | |||||||| ||||||||||||| |
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| T |
50568492 |
taaacacatgcatatcatatacacaaaagagagaagatgatcaagaatagaggaacctaaaaata |
50568556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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