View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_14 (Length: 266)
Name: NF12347_low_14
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 52270367 - 52270118
Alignment:
| Q |
1 |
tactactagaactgtgatggtaacaaacatgcttattcaaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270367 |
tactactagaactgtgatggtaacaaacatgcttattggaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttatat |
52270268 |
T |
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| Q |
101 |
tctactgtcatactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270267 |
tctactgtcatactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaaa |
52270168 |
T |
|
| Q |
201 |
tacacagaacaaatatgccacttcaacttctaaatctcaagagtcaaatg |
250 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270167 |
tactcagaacaaatatgccacttcaacttctaaatctcaagagtcaaatg |
52270118 |
T |
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