View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12347_low_15 (Length: 244)
Name: NF12347_low_15
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 36961341 - 36961527
Alignment:
| Q |
20 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36961341 |
gagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
36961440 |
T |
|
| Q |
120 |
taagatggatcaagtgaatgcaaacat-ggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcctggagtta |
205 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36961441 |
taagatggatcaggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaaacctggagtta |
36961527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 35097805 - 35097959
Alignment:
| Q |
31 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
130 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| | |
|
|
| T |
35097805 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35097904 |
T |
|
| Q |
131 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
185 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || ||||| |
|
|
| T |
35097905 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35097959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 35098094 - 35098248
Alignment:
| Q |
31 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
130 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| | |
|
|
| T |
35098094 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35098193 |
T |
|
| Q |
131 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
185 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || ||||| |
|
|
| T |
35098194 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35098248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 36296661 - 36296493
Alignment:
| Q |
20 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
119 |
Q |
| |
|
||||||| | ||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| || || ||||||| ||| |||||| | || ||||| |
|
|
| T |
36296661 |
gagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgc |
36296562 |
T |
|
| Q |
120 |
taagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
188 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
36296561 |
caagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagt |
36296493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 35106984 - 35107137
Alignment:
| Q |
32 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
131 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||||| |
|
|
| T |
35106984 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatca |
35107083 |
T |
|
| Q |
132 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
185 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| ||| | ||||||||||| |
|
|
| T |
35107084 |
agtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaaga |
35107137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 35072876 - 35072720
Alignment:
| Q |
32 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
131 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
35072876 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatca |
35072777 |
T |
|
| Q |
132 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
188 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
35072776 |
agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
35072720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 36940678 - 36940536
Alignment:
| Q |
25 |
agaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaaga |
124 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||| |||||||| |||||||||||| |||||||||| || |||||| | ||||||||||| | |
|
|
| T |
36940678 |
agaagcgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaa |
36940579 |
T |
|
| Q |
125 |
tggatcaagtgaatgcaaacatggagaatggtgttctcactgt |
167 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||||||| |
|
|
| T |
36940578 |
tggatcaaatgaaagctgcaatggagaatggcattctcactgt |
36940536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 24040934 - 24040766
Alignment:
| Q |
30 |
cgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggat |
129 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||| |
|
|
| T |
24040934 |
cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat |
24040835 |
T |
|
| Q |
130 |
caagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcct |
198 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||| ||| | |||||||||||||| || |||||| |
|
|
| T |
24040834 |
caagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcct |
24040766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 24014376 - 24014219
Alignment:
| Q |
31 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
130 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||| || || |||||||||| || || ||| | || ||||| || ||||||| |
|
|
| T |
24014376 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatc |
24014277 |
T |
|
| Q |
131 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
188 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
24014276 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
24014219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 34919131 - 34919237
Alignment:
| Q |
81 |
tgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaag |
180 |
Q |
| |
|
|||||| || ||||||| |||||| ||| | ||||||| ||| |||||||| || || || ||||||||||| ||||| ||||| ||| |||||||| |
|
|
| T |
34919131 |
tgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaag |
34919230 |
T |
|
| Q |
181 |
gaagaag |
187 |
Q |
| |
|
||||||| |
|
|
| T |
34919231 |
gaagaag |
34919237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University