View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12347_low_17 (Length: 218)

Name: NF12347_low_17
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12347_low_17
NF12347_low_17
[»] chr5 (1 HSPs)
chr5 (1-202)||(37975084-37975287)
[»] chr4 (2 HSPs)
chr4 (75-159)||(19121678-19121763)
chr4 (75-135)||(27843827-27843888)
[»] chr7 (2 HSPs)
chr7 (87-162)||(21255443-21255518)
chr7 (107-155)||(25592662-25592710)
[»] chr3 (1 HSPs)
chr3 (75-136)||(31294872-31294934)
[»] scaffold0370 (2 HSPs)
scaffold0370 (90-139)||(8913-8962)
scaffold0370 (90-139)||(14203-14252)
[»] chr2 (1 HSPs)
chr2 (75-150)||(8821706-8821781)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37975287 - 37975084
Alignment:
Q  1 tttgggtttaaactacactaagaaatgcttacataaaacataaatgtaagcgataannnnnnnnnnnnnnnn--gcaaaataagcttgttgattgattga 98  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||                  || |||||||||||||||||||||||    
T  37975287 tttgggtttaaactacactaagaaatgcataaataaaacataaatgtaagcgataattttttttttttttttttgcgaaataagcttgttgattgattga 37975188  T
Q  99 atatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcctatatgcttaaacctccattcagctaatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37975187 atatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcctatatgcttaaacctccattcagctaatt 37975088  T
Q  199 tcac 202  Q
    ||||    
T  37975087 tcac 37975084  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 19121678 - 19121763
Alignment:
Q  75 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaa 159  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||  ||| ||||||||    
T  19121678 aaaataagcttgtttgattgattggatatgttaattacaatgtatgcacaaaatatttatagtgtcattatttcctattagccaaa 19121763  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 27843888 - 27843827
Alignment:
Q  75 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatag 135  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||| |||||| | |||||||||    
T  27843888 aaaataaacttgtttgattgattgaatgtgttaattacaatgtatgaacatagtatttatag 27843827  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 21255518 - 21255443
Alignment:
Q  87 ttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaa 162  Q
    |||||||||||| |  |||||||| ||||| |||| | |||||||||| ||||| ||||||||| ||| |||||||    
T  21255518 ttgattgattgagtgcgttaattacaatgtatgaatataatatttataatgtaactattgtctattagacaaacaa 21255443  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 25592710 - 25592662
Alignment:
Q  107 attagaatgtctgaacaaaatatttatagtgtaattattgtctagtagc 155  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||| ||||    
T  25592710 attacaatgtatgaacaaagtatttatagtgtaactattgtctactagc 25592662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 31294934 - 31294872
Alignment:
Q  75 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagt 136  Q
    |||||||||||||| ||||||||| || ||||| ||| ||||| |||| ||||||||||||||    
T  31294934 aaaataagcttgtttgattgattgtatgtgttatttaaaatgtatgaataaaatatttatagt 31294872  T

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Target: scaffold0370 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 8913 - 8962
Alignment:
Q  90 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 139  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  8913 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 8962  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 14203 - 14252
Alignment:
Q  90 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 139  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  14203 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 14252  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 8821706 - 8821781
Alignment:
Q  75 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtcta 150  Q
    |||||||||||||| ||||||||| || ||| ||||| ||| | | |||| |||||||||||||||| |||||||||    
T  8821706 aaaataagcttgtttgattgattggatgtgtaaattacaat-tatcaacataatatttatagtgtaactattgtcta 8821781  T

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