View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12347_low_2 (Length: 555)

Name: NF12347_low_2
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12347_low_2
NF12347_low_2
[»] chr3 (2 HSPs)
chr3 (17-541)||(31103440-31103982)
chr3 (502-541)||(16811047-16811086)
[»] chr8 (3 HSPs)
chr8 (72-136)||(8119226-8119292)
chr8 (409-482)||(30334802-30334873)
chr8 (496-541)||(27819225-27819270)
[»] chr7 (4 HSPs)
chr7 (496-542)||(25182482-25182528)
chr7 (73-126)||(22377419-22377472)
chr7 (72-136)||(29758290-29758356)
chr7 (404-541)||(28495976-28496113)
[»] chr1 (2 HSPs)
chr1 (461-538)||(2739647-2739724)
chr1 (72-127)||(30420174-30420230)
[»] chr6 (3 HSPs)
chr6 (492-535)||(9440832-9440875)
chr6 (404-440)||(13493013-13493049)
chr6 (409-541)||(23776563-23776694)
[»] chr4 (2 HSPs)
chr4 (406-533)||(27578169-27578296)
chr4 (404-471)||(27578790-27578857)
[»] scaffold0022 (1 HSPs)
scaffold0022 (404-473)||(163261-163330)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 31103440 - 31103982
Alignment:
Q  17 agacaagtctgagtaatcaaaccatcttttgaagaatgatttatgaagtgtctgtcaacacggacaaattcacgtaccaacagaccctgcaacaaatcac 116  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||    
T  31103440 agacacgtctgagtaatcaaaccgtcttttgaagaatgatttatgaagtgtccatcaacacagacaaattcacgtaccaacagaccctgcgacaaatcac 31103539  T
Q  117 agcaagcatttcagccctttgaaccctacacgcaaagtaatcgtctttcccgtttatttaattttaatcagtgacccaaacaagctattggttaccnnnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  31103540 agcaagcatttcagccctttgaaccctacacgcaaagtaatcgtctttcccgtttatttaattttaatcagtgacccaaacaagctattggttaccagaa 31103639  T
Q  217 nnncgtgctactggttgggtgctcccctgtactactattttatgaacctagattacttctttttatgccaagatgacatatataacttataacataaa-- 314  Q
       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  31103640 aaacatgctactggttgggtgctcccctgtactactattttatgaacctagattacttctttttattccaagatgacatatataacttataacataaata 31103739  T
Q  315 ------------------gtcattcatctattaaattttgatttgaaattaaactttataatggattatgtaccatcacaatcaactaatttaagtgttg 396  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |    
T  31103740 aaatttgattgttataaagtcattcatctattaaattttgatttgaaattaaactttataatggattatgtaccatcacaatca--taatttaagtgtag 31103837  T
Q  397 tcaaccaaccctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtcatccaactccaaatt 496  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  31103838 tcaaccaaccctacaaatcaacacgagtcgtttcagcatgttttgttctcactcgcgcgttttttgggaaacttctcataaagtcattcaactccaaatt 31103937  T
Q  497 actcaaagtcaaaaacacttaaatgtgaagttcttatggaatgag 541  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  31103938 actcaaagtcaaagacacttaaatgtgaagttcttatggaatgag 31103982  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 16811086 - 16811047
Alignment:
Q  502 aagtcaaaaacacttaaatgtgaagttcttatggaatgag 541  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  16811086 aagtcaagcacacttaaatgtgaagttcttatggaatgag 16811047  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 8119226 - 8119292
Alignment:
Q  72 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcatt-tcagcccttt 136  Q
    ||||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  8119226 caacacgaacaagattcatgtaccaacagcccctgcaacatatcacagcaagcattatcagcccttt 8119292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 30334802 - 30334873
Alignment:
Q  409 acaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtca 482  Q
    ||||||||||| ||||| ||||| | |||||| ||||||||  | |||||| ||||||||||||||||| ||||    
T  30334802 acaaatcaacatgagtctttttaacgtgttttgttttcact--cacgttttatgggaaacttctcataatgtca 30334873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 27819225 - 27819270
Alignment:
Q  496 tactcaaagtcaaaaacacttaaatgtgaagttcttatggaatgag 541  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||    
T  27819225 tactcaaagtcaaacacacttaactgtggagtttttatggaatgag 27819270  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 25182528 - 25182482
Alignment:
Q  496 tactcaaagtcaaaaacacttaaatgtgaagttcttatggaatgagt 542  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||    
T  25182528 tactccaagtcaaacacacttaactgtgaagttcttatggaatgagt 25182482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 22377472 - 22377419
Alignment:
Q  73 aacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcatt 126  Q
    ||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||    
T  22377472 aacacggacaagattcatgtaccaacag-ccctgcgacaaatcacagcaagcatt 22377419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 29758356 - 29758290
Alignment:
Q  72 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagca-tttcagcccttt 136  Q
    |||||||||||| |||||||||||||||| |||||| |||| |||||||  ||| ||||||||||||    
T  29758356 caacacggacaagattcacgtaccaacagcccctgcgacaattcacagcgcgcattttcagcccttt 29758290  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 541
Target Start/End: Complemental strand, 28496113 - 28495976
Alignment:
Q  404 accctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtcatccaactccaaattactcaaa 503  Q
    |||| ||||| ||||||||||| ||| ||| |||||| |  |||||||| || || | |||||||||| ||  | |||| ||| | | ||||| ||| ||    
T  28496113 accccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccgggaaacttcccaataggtcacccatcccaaaattgctccaa 28496014  T
Q  504 gtcaaaaacacttaaatgtgaagttcttatggaatgag 541  Q
    |||||  || ||||| |||| |||||||||||||||||    
T  28496013 gtcaagcacgcttaactgtggagttcttatggaatgag 28495976  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 538
Target Start/End: Complemental strand, 2739724 - 2739647
Alignment:
Q  461 tgggaaacttctcataaagtcatccaactccaaattactcaaagtcaaaaacacttaaatgtgaagttcttatggaat 538  Q
    |||||||||| ||| || ||||||||  || ||||| |||||||||||| ||||||||   |||||||||||||||||    
T  2739724 tgggaaacttttcagaaggtcatccatatcaaaattgctcaaagtcaaacacacttaaccatgaagttcttatggaat 2739647  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 30420174 - 30420230
Alignment:
Q  72 caacacggacaa-attcacgtaccaacagaccctgcaacaaatcacagcaagcattt 127  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| || |||||||    
T  30420174 caacacggacaagattcacgtaccaacaacccctgcaacaaatcactgcgagcattt 30420230  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 9440832 - 9440875
Alignment:
Q  492 aaattactcaaagtcaaaaacacttaaatgtgaagttcttatgg 535  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  9440832 aaattgctcaaagtcaaacacacttaactgtgaagttcttatgg 9440875  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 13493049 - 13493013
Alignment:
Q  404 accctacaaatcaacacgagtcgttttagcatgtttt 440  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  13493049 accctacaaatcaacacgagtcttttcagcatgtttt 13493013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 541
Target Start/End: Complemental strand, 23776694 - 23776563
Alignment:
Q  409 acaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtcatccaactccaaattactcaaagtcaa 508  Q
    ||||| |||||||| || ||| ||| |||||| |  |||||||| ||||| || ||||||||| ||  | |||||||| | | ||||| ||| |||||||    
T  23776694 acaaaccaacacgaatcttttcagcgtgttttgtcgtcactcgcacgtttactaggaaacttcccagtaggtcatccatcccaaaattgctccaagtcaa 23776595  T
Q  509 aaacacttaaatgtgaagttcttatggaatgag 541  Q
      || ||||| ||||||||||||||| ||||||    
T  23776594 gtacgcttaa-tgtgaagttcttatgaaatgag 23776563  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 533
Target Start/End: Original strand, 27578169 - 27578296
Alignment:
Q  406 cctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctcataaagtcatccaactccaaattactcaaagt 505  Q
    |||||||  ||||||||||| ||| ||| |||||| |  |||||||| ||||||| |||||||||| ||||| ||||  || | | ||| | ||| ||||    
T  27578169 cctacaacccaacacgagtcttttcagcgtgttttgtcctcactcgcacgttttcagggaaacttcccataaggtcactcatcccaaaactgctccaagt 27578268  T
Q  506 caaaaacacttaaatgtgaagttcttat 533  Q
    |||  || ||||| ||||||||||||||    
T  27578269 caagcacgcttaactgtgaagttcttat 27578296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 27578790 - 27578857
Alignment:
Q  404 accctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttc 471  Q
    ||||||||||||||||| |||| ||| |||||| ||| |  |||||||| || |||||||||||||||    
T  27578790 accctacaaatcaacacaagtcttttcagcatgatttgtcctcactcgcacgctttctgggaaacttc 27578857  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 163330 - 163261
Alignment:
Q  404 accctacaaatcaacacgagtcgttttagcatgttttattttcactcgcgcgttttctgggaaacttctc 473  Q
    |||||||||| ||||||||||| ||| ||| |||||| |  |||||||| || || ||||||||||||||    
T  163330 accctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttactgggaaacttctc 163261  T

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