View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12347_low_3 (Length: 498)
Name: NF12347_low_3
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 11850762 - 11850292
Alignment:
| Q |
19 |
agatgcgtcttaagagcattgatctttcttgtaataacctaacaggtgaaataccaaaaaagattggatatttggttggattagtctctttgaatttatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850762 |
agatgcgtcttaagagcattgatctttcaagaaataacttaacaggtgaaataccaaaaaagattggatatttggttggattagtctctttgaatttatc |
11850663 |
T |
|
| Q |
119 |
aagaaacaatttgagcggcgaaatcccatctgaaattggaaatttagtttcacttgatttcctcgacttgtcaagaaactatttctttggtaaaattcct |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11850662 |
aagaaacaatttgagcggaaaaatcccatctgaaattggaaatttagtttcacttgatttcctcgacttgtcaagaaaccttttctttggtaaaattcct |
11850563 |
T |
|
| Q |
219 |
tccactctttccaagatcgaccggctagaagttttagacttgtcaaacaactctctctccggaagaatcccttttggaagacaattgcaaaccttagatc |
318 |
Q |
| |
|
|| ||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11850562 |
tctactctttccaatatcgatcggcttgaaattttagacttgtcaaacaactctctctccggaagaatcccttttggcagacaattgcaaaccttagatc |
11850463 |
T |
|
| Q |
319 |
cctcaggttttgaaggaaatcttgatctttgtggtgaaccacttgaaaagaaatgtcccgaagacacgaagacagtaaatcctcaagggtcagaaattca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11850462 |
cctcaggttttgaaggaaatcttgatctttgtggtgaaccacttgaataaaaatgtcccgaagacacgacaacagtaaatcctcaagggtcagaaattca |
11850363 |
T |
|
| Q |
419 |
tggggaagatgacaattcaattttccaagaaggattttacatgtgcttggggctaggctatttcacaggtt |
489 |
Q |
| |
|
||| ||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11850362 |
tggtgaagatggcaattcagttttccatgaaggattttacatgtgcttggggataggctatttcacaggtt |
11850292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Original strand, 11964783 - 11965252
Alignment:
| Q |
19 |
agatgcgtcttaagagcattgatctttcttgtaataacctaacaggtgaaataccaaaaaagattggatatttggttggattagtctctttgaatttatc |
118 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11964783 |
agatgcgtcttaacagcattgatctttcaagtaataacttaacaggtgaaataccaaaaaagattggatatttggttggattagtctctttgaatttatc |
11964882 |
T |
|
| Q |
119 |
aagaaacaatttgagcggcgaaatcccatctgaaattggaaatttagtttcacttgatttcctcgacttgtcaagaaactatttctttggtaaaattcct |
218 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
11964883 |
aagaaacaatttgagcggaaaaataccatctgaaattggaaatttagtttcacttgatttcctcgacttgtcaagaaaccgtttcattggtaaaattcct |
11964982 |
T |
|
| Q |
219 |
tccactctttccaagatcgaccggctagaagttttagacttgtcaaacaactctctctccggaagaatcccttttggaagacaattgcaaaccttagatc |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11964983 |
tccactctttccaagatcgatcggctagaaattttagacttgtcaaacaactctctctccggaagaatcccttttggcagacaattgcaaaccttagatc |
11965082 |
T |
|
| Q |
319 |
cctcaggttttgaaggaaatcttgatctttgtggtgaaccacttgaaaagaaatgtcccgaagacacgaagacagtaaatcctcaagggtcagaaattca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
11965083 |
cctcaggttttgaaggaaatcttgatctttgtggggaaccacttgaaaaaaaatgtcccaaagacgcgacgacagtaaatcctcaagggtcagaaatt-a |
11965181 |
T |
|
| Q |
419 |
tggggaagatgacaattcaattttccaagaaggattttacatgtgcttggggctaggctatttcacaggtt |
489 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11965182 |
tggtgaagatgacaattcagttttccatgaaggattttacatgtgcttggggctaagctatttcacaggtt |
11965252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Original strand, 11930496 - 11930966
Alignment:
| Q |
19 |
agatgcgtcttaagagcattgatctttcttgtaataacctaacaggtgaaataccaaaaaagattggatatttggttggattagtctctttgaatttatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11930496 |
agatgcgtcttaagagcattgatctttctagtaataacttaacaggtgaaataccacaaaagattggatatttggttggattagtctctttgaatttatc |
11930595 |
T |
|
| Q |
119 |
aagaaacaatttgagcggcgaaatcccatctgaaattggaaatttagtttcacttgatttcctcgacttgtcaagaaactatttctttggtaaaattcct |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
11930596 |
aagaaacaatttgagcggagaaatcccatctgaaattggaaatttagtttcacttgatttcctcgacttatcaagaaaccatttctttggtaaaattcct |
11930695 |
T |
|
| Q |
219 |
tccactctttccaagatcgaccggctagaagttttagacttgtcaaacaactctctctccggaagaatcccttttggaagacaattgcaaaccttagatc |
318 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11930696 |
tccactctttccaggatcgatcggctggaagttttagacttgtcaaacaactctctctctggaagaatcccttttggcagacaattgcaaaccttagatc |
11930795 |
T |
|
| Q |
319 |
cctcaggttttgaaggaaatcttgatctttgtggtgaaccacttgaaaagaaatgtcccgaagacacgaagacagtaaatcctcaagggtcagaaattca |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
11930796 |
cctccagttttgaaggaaatcttgatctttgtggtgaaccacttgaaaaaaaatgtcttgaagacgtgacaccagtaaatcctcgagggtcagaaattca |
11930895 |
T |
|
| Q |
419 |
tggggaagatgacaattcaattttccaagaaggattttacatgtgcttggggctaggctatttcacaggtt |
489 |
Q |
| |
|
||| ||||||||||||||| |||| || ||||||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
11930896 |
tggtgaagatgacaattcagtttttcatgaaggatattacatgttcttgggaacaagctatttcacaggtt |
11930966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University