View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_4 (Length: 475)
Name: NF12347_low_4
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 56097732 - 56097311
Alignment:
| Q |
12 |
acagacagataaaaaggcgtaaaaggtggtaatagtggagacagaca----gacagatccttgtattatgtattatgatcatattattgaagaatgcatg |
107 |
Q |
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| T |
56097732 |
acagacagataaaaaggcgtaaaaggtggtaatagtggagacatacaaacagacagatccttgtattatgcattatgatcatattattgaagaatgcatg |
56097633 |
T |
|
| Q |
108 |
aaagacacttgtaactctaaagtcaatgatcttatgcatgcatgcacgacacttgtttcattccaaaatatacaatcacaattcacaacccatttaggcc |
207 |
Q |
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| T |
56097632 |
aaagacacttgtaactctaaagtcaatgatcttatgcatgcatgcacgacacttgttccattccaaaatatacaatcacaattcacaacccatttacgcc |
56097533 |
T |
|
| Q |
208 |
atcatcttctttttcaaggtttccgttaccttcctttacttgcacaacaaaacaaaggtggctggattgatcgatggtgatatggtagatcacttggacg |
307 |
Q |
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| T |
56097532 |
atcatcttctttttcatggtttccgttaccttcctttacttgcacaacaaaacaaaggtggctggagtgatcgatggtggtatggtagatcacttggacg |
56097433 |
T |
|
| Q |
308 |
aaagaaaatacagagaaataaatcttgtttaaacagagaaaacaagaattcagaccagatactaaatatcaacaaattgatcattcgactaaattaaaga |
407 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56097432 |
aaagaaaatacagataaataaatcttgtttaaacagagaaaacaagaattcagaccagatacaaaatatcaacaaattgatcattcgactaaattaaaga |
56097333 |
T |
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| Q |
408 |
tgtctcaacaaaatattatata |
429 |
Q |
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| T |
56097332 |
tgtctcaacaaaatattatata |
56097311 |
T |
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