View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_5 (Length: 467)
Name: NF12347_low_5
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Original strand, 4088896 - 4089331
Alignment:
| Q |
20 |
aaactcctaagatttaatagtttttatattagatgtaaaacttagaatttttatgcgaagcatgtatcttgcgatgtaaacttgtgagaattttaaaggt |
119 |
Q |
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| T |
4088896 |
aaactcctaagatttaatagtttttatattaaatgtaaagcttagaatttttatgtgaagcatgtatcttgcgatgtaaacttgtgagaattttaaaggt |
4088995 |
T |
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| Q |
120 |
atgatcgaaatatggttttgataccatttcaaaatttaagtcggatctaattcaactattacaaaacccgataatctaccatctataaacacattttcat |
219 |
Q |
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| T |
4088996 |
atgatcgaaatatggttttgataccatttcaaaatttaagtcggatctaattcaactattacaaaacccgataatctaccacgtataaatacattttcat |
4089095 |
T |
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| Q |
220 |
gtgtatcaataacacaaaagtgactaatttacatgtgttttgatttatatacgcttttaacttcttataataaaaatgttcaagagaggagagaacaatt |
319 |
Q |
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| T |
4089096 |
gtgtatcaataacacaa--gtgactaatttacatgtgttttgatttatatacgcttttaacttcttataataaaaatgttcaagagaggagagaacaatt |
4089193 |
T |
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| Q |
320 |
aattattcactacatcaatagtacaatctagttggtttacataaacaatactgttatgtacttatgttctttttattactctaagcttgataccatgctt |
419 |
Q |
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| T |
4089194 |
aattattcactacatcaatagtacaatctagatggtttacataaacaatactgttatgtacttatgttctttttattactctaagcttgataccatgctt |
4089293 |
T |
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| Q |
420 |
gaagttaagaactaaaccatattcaagttccacaggtt |
457 |
Q |
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| T |
4089294 |
gaagttaagaactaaaccatattcaagttctacaggtt |
4089331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 4084091 - 4084154
Alignment:
| Q |
386 |
ttctttttattactctaagcttgataccatgcttgaagttaagaactaaaccatattcaagttc |
449 |
Q |
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| T |
4084091 |
ttctttttattactcaaagattgacaccatgcttgaagttgaaaactaaaccatattcaagttc |
4084154 |
T |
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