View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12347_low_7 (Length: 448)
Name: NF12347_low_7
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_7 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold1004 (1 HSPs) |
| | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 23897010 - 23896595
Alignment:
| Q |
17 |
gtgactcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
23897010 |
gtgactcatattccgtttgatctcgtggttgaaatcctgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctc |
23896911 |
T |
|
| Q |
117 |
taatctcgaatgatcagaaattcttcaagaaacaccttctcttatcaaccaaacgcaaacacctcgtcacaagctcattgcactcgtcaagaaaagagtt |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896910 |
taatctcgaaggatcagaaattcttcaagaaacaccttctcttatcaaccaaacgcaaacacctcgtcacaagctcattgcactcgtcaagaaaagagtt |
23896811 |
T |
|
| Q |
217 |
atctgtaatgtcttactcaattgactctattttcacatctgaaactgccacacaactcgattactctcccattaatacagattgtatggatcacctcatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23896810 |
atctgtaatgtcttactcaattgactctattttcacatctgaaactgccacacaactcgattactctcccattaatacagattgtatggatcgactcatt |
23896711 |
T |
|
| Q |
317 |
gcttcttgcgatggtctcatttgttttgcaactgatactcatcttgccgttatttcgaacccttccattagaaaattaaagaaattaccctctttagaac |
416 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
23896710 |
gcttcttgcgacggtctcatttgttttgcaattgatactcatcttgccgttacttggaacccttccattagaaaattaaagaaattacccactttagaac |
23896611 |
T |
|
| Q |
417 |
tacttcccaaaaaatt |
432 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
23896610 |
tacctcccaaaaaatt |
23896595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 25611855 - 25611722
Alignment:
| Q |
22 |
tcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatc |
121 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| ||||| ||||| || ||||||||||| |||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
25611855 |
tcatgttccgtttgatgtcgtcgttgaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaata |
25611756 |
T |
|
| Q |
122 |
tcgaatgatcagaaattcttcaagaaacaccttc |
155 |
Q |
| |
|
|||||||||| || || ||||||||||||||| |
|
|
| T |
25611755 |
tcgaatgatcccaattttgtcaagaaacaccttc |
25611722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 24512229 - 24512401
Alignment:
| Q |
18 |
tgactcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctct |
117 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| || ||||||||||| | ||||||||| |||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
24512229 |
tgactcatattctgtttgatctcgtgactgaaattctatgtagactccctgccaagttcctcgtgcaattcggatgcgtctgcaagtcatggaattctct |
24512328 |
T |
|
| Q |
118 |
aatctcgaatgatcagaaattcttcaagaaacaccttc---tcttatcaaccaaacgcaaacacctcgtcaca |
187 |
Q |
| |
|
||||| || |||| ||||| ||| ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
24512329 |
gatctcaaaagatctcgaattcgccaaaaaataccttcgcatgtcaacaaccaaacgcaaacaccttgtcaca |
24512401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 24234222 - 24234114
Alignment:
| Q |
47 |
gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatgatcagaaattcttcaaga |
146 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| ||||||||||| ||||| |||||| ||||||| || ||||| ||||||| |||||| ||| | |
|
|
| T |
24234222 |
gaaatcttgtgtagactccctgtcaaattcctcctacaattccgctgtgtctgtaagtcatggaattcgcttatctctaatgatcctaaattcaccaaaa |
24234123 |
T |
|
| Q |
147 |
aacaccttc |
155 |
Q |
| |
|
||||||||| |
|
|
| T |
24234122 |
aacaccttc |
24234114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 24635662 - 24635570
Alignment:
| Q |
31 |
gtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc |
123 |
Q |
| |
|
|||||||||| || |||||| || ||||||||||| | ||||||||| |||||||| | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
24635662 |
gtttgatctcatgactgaaattctatgtagactccctgccaagttcctcatgcaattctgatgcgtctgcaagtcatggaattctctgatctc |
24635570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 25869530 - 25869445
Alignment:
| Q |
46 |
tgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatgatc |
131 |
Q |
| |
|
||||||||| || ||| ||||| | || |||||| ||||| |||||||| | ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
25869530 |
tgaaatcctatgcagattccccatcaaattcctcatgcaactccgctgcatttgcaagtcatggaattctctaatctcaaatgatc |
25869445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 24247397 - 24247301
Alignment:
| Q |
27 |
ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc |
123 |
Q |
| |
|
||||||| ||| |||||| |||||||||||| |||||||| || |||| ||| | | |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
24247397 |
ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagttgtggaattctctcatctc |
24247301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 24512603 - 24512643
Alignment:
| Q |
374 |
aacccttccattagaaaattaaagaaattaccctctttaga |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24512603 |
aacccttccattagaaaattaaagaagttaccctctttaga |
24512643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 414
Target Start/End: Complemental strand, 24233990 - 24233840
Alignment:
| Q |
264 |
ccacacaactcgattactctcccattaatacagattgtatggatcacctcattgcttcttgcgatggtctcatttgttttgcaactgatactcatcttgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||| |||||||||||| ||||| |||||| ||||||||| | ||| | || || |
|
|
| T |
24233990 |
ccacacaactcgattactctcccattattacatcatggcaggatggcctcattgcttcatgcgacggtctcctttgttttgtcatcgatcaacgcctcgc |
24233891 |
T |
|
| Q |
364 |
cgttatttcgaacccttccattagaaaattaaagaaattaccctctttaga |
414 |
Q |
| |
|
||| | | ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
24233890 |
tgttctctataacccttgcattagaaaagtaaagaaattaccctctttaga |
24233840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 24635325 - 24635267
Alignment:
| Q |
356 |
catcttgccgttatttcgaacccttccattagaaaattaaagaaattaccctctttaga |
414 |
Q |
| |
|
|||||||| ||| ||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
24635325 |
catcttgcggttctttataacccttccatcagaaaattaaagaagttaccctctttaga |
24635267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 51831606 - 51831702
Alignment:
| Q |
27 |
ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc |
123 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | ||||| || || || ||||| ||| |||| || |||||||||||| |||| ||||| ||||| |
|
|
| T |
51831606 |
ttccgtttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctc |
51831702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 45693712 - 45693643
Alignment:
| Q |
54 |
tgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc |
123 |
Q |
| |
|
||||||||||||| || ||||| || || ||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
45693712 |
tgtgtagactcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctc |
45693643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 41234 - 41133
Alignment:
| Q |
30 |
cgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatga |
129 |
Q |
| |
|
|||||||||| |||| ||||||||| ||| ||||||| || || |||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
41234 |
cgtttgatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatga |
41135 |
T |
|
| Q |
130 |
tc |
131 |
Q |
| |
|
|| |
|
|
| T |
41134 |
tc |
41133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 1422030 - 1421900
Alignment:
| Q |
25 |
tattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcg |
124 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| || || |||||||| |||||||| |||||||| ||||| |||||| ||||||||| |
|
|
| T |
1422030 |
tattccgtttgatctcgtgaaagaaatcttgtgtagactcccagtgaaattcctcctacaattccgttgcgtctgtaagtcgtggaattttctaatctca |
1421931 |
T |
|
| Q |
125 |
aatgatcagaaattcttcaagaaacaccttc |
155 |
Q |
| |
|
||||||| |||||| ||| |||||||||| |
|
|
| T |
1421930 |
aatgatcccaaattcgccaaaaaacaccttc |
1421900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 1397 - 1455
Alignment:
| Q |
47 |
gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtc |
105 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
1397 |
gaaatcctgtgtagacttcccgtgaaattactccttcaatttcgctgcgtctgcaagtc |
1455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 11032453 - 11032496
Alignment:
| Q |
373 |
gaacccttccattagaaaattaaagaaattaccctctttagaac |
416 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
11032453 |
gaacccttccataagaaaatttaagaaattaccctctttggaac |
11032496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 1941401 - 1941334
Alignment:
| Q |
50 |
atcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctct |
117 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||| |||||||| ||||| |||||||| |||||||||| |
|
|
| T |
1941401 |
atcctctgtagactccccgtgaagcttctccttcaattccggtgcgtttgcaagtcgtggaattctct |
1941334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 43991242 - 43991346
Alignment:
| Q |
27 |
ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaa |
126 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| | || || ||| | ||| ||||| ||| ||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
43991242 |
ttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctcttatctcgaa |
43991341 |
T |
|
| Q |
127 |
tgatc |
131 |
Q |
| |
|
||||| |
|
|
| T |
43991342 |
tgatc |
43991346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 3891 - 3949
Alignment:
| Q |
47 |
gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtc |
105 |
Q |
| |
|
|||||||||||||| || ||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
3891 |
gaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctgcgtctgcaagtc |
3949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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