View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_8 (Length: 419)
Name: NF12347_low_8
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 40506143 - 40505735
Alignment:
| Q |
1 |
ggcggcgtacttcgccaccgcacttcacttaccaccagaagagggtgtttgtcagtttccggcggcacctccttcttccacacctctccttcatcaaagc |
100 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40506143 |
ggcggcttacttcgccaccgcacttcactgaccaccagaagagggtgtttgtcagtttccggcggaacctccttcttccacacctctccttcatcaaagc |
40506044 |
T |
|
| Q |
101 |
gctatttgtcattcacatgcttgagcatttcttctgattcccgtaagtacccaccatttcttcttcattgcattttccaccaaaatcaataaagttacat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506043 |
gctctttgtcattcacatgcttgagcatttcttctgattcccgtaagtacccaccatttcttcttcattgcattttccaccaaaatcaataaagttacat |
40505944 |
T |
|
| Q |
201 |
tttttacaatacgggtcattgtttttcctaatgttaacgttaattctgatcatggattgaggaatgtataaatctatgatttagtgcttgttgggtttga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505943 |
tttttacaatacgggtaattgtttttcctaatgttaacgttaattctgatcatggattgaggaatgtataaatctatgatttagtgcttgttgggtttga |
40505844 |
T |
|
| Q |
301 |
ttgattgtaggaataggaattaaggaagctgttgaaacagaaaaagcacctgctgctttgggaacatattctcaagcaaacaaagtcaacaacattcttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40505843 |
ttgattgtaggaataggaattaaggaagctgttgaaacagaaaaagcacctgctgctttgggaccatattctcaagcaaacaaagtcaacaacattcttt |
40505744 |
T |
|
| Q |
401 |
ttgtctctg |
409 |
Q |
| |
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||||||||| |
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| T |
40505743 |
ttgtctctg |
40505735 |
T |
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Back To:
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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 20483172 - 20483087
Alignment:
| Q |
322 |
aaggaagctgttgaaacagaaaaagcacctgctgctttgggaacatattctcaagcaaacaaagtcaacaacattctttttgtctc |
407 |
Q |
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|||||||||||| ||||||||||| || || || |||||| | ||||||||||||| ||||| ||||||| |||| |||||||| |
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| T |
20483172 |
aaggaagctgtttcgacagaaaaagccccagcagcattgggaccgtattctcaagcaatcaaagccaacaaccttctatttgtctc |
20483087 |
T |
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