View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12348_low_2 (Length: 515)
Name: NF12348_low_2
Description: NF12348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12348_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 500
Target Start/End: Complemental strand, 7786336 - 7785843
Alignment:
| Q |
15 |
acctgtgctatgatctacttacagaaaaatggtagccaaatatgaccattt-------ttcaactaaagtctattacgtaaccnnnnnnn-ctaaagtct |
106 |
Q |
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| T |
7786336 |
acctgtgctatgatctacttacagaaaaatggtagccaaatatgaccatttattcaaattcaactaaagtctattacgtaaccaaaaaaaactaaagtct |
7786237 |
T |
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| Q |
107 |
attacagtagaaatatctcaatatttagcttccactaaccaaagaaggtaaggaatatcgaatcaagttgtatataagtctaggtaactcccccaatata |
206 |
Q |
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| T |
7786236 |
attacagtagaaatatctcaatatttagcttccactaaccaaagaaggtaaggaatatcgaatcaagttgtatataagtctaggtaactcccccaatata |
7786137 |
T |
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| Q |
207 |
tatggaagaaaataacttttaagcatgtaggataattaaaaacggtaaagataaacatttatacatttggacaaatattttcatttattttctcatacaa |
306 |
Q |
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| T |
7786136 |
tatggaagaaaataacttttaagcatgtaggataattaaaaacggtaaagataaacatttatacatttggacaaatattttcatttattttctcatacaa |
7786037 |
T |
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| Q |
307 |
agactataatgtggattagctcctagtgtggtcaagattgccgtaaacgattaacatgctcacaaatctcaattatcaactacacaaattgaattacaag |
406 |
Q |
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| T |
7786036 |
agactataatgtggattagctcctagtgtggtcaagattgccgtaaacgattaacatgctcacaaatctcaattatcaactacacaaattgaattacaag |
7785937 |
T |
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| Q |
407 |
ttaatcaacataatccttcacgcgcaagtcacacatagcttaaaataggttattgattctttttaaggaaaatggttagtgattaagttataag |
500 |
Q |
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| T |
7785936 |
ttaatcaacataatccttcacgcgcaagtcacacatagcttaaaataggttattgattctttttaaggaaaatggttagtgattaagttataag |
7785843 |
T |
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