View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12348_low_3 (Length: 443)
Name: NF12348_low_3
Description: NF12348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12348_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 10915718 - 10915458
Alignment:
| Q |
18 |
ctaatctataaccgttgagccacggtgtgccactaacaataacttctacgcctccttgctatatataagctatatataagtggattctttgcaattccca |
117 |
Q |
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| T |
10915718 |
ctaatctataaccgttgagccacggtgtgccactaacaataacttctacgcctccttgctatatataagctatatataagtggattctttgcaattccca |
10915619 |
T |
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| Q |
118 |
aaggtacgattcatcgaccctataactctctataannnnnnnaccacgacgttacaaagcttacaaacacccataacaactgcactggacgtcattcatc |
217 |
Q |
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| T |
10915618 |
aaggtacgattcatcgaccctataactctctataacccccccaccacgacgttacaaagcttacaaacacccataacaactgcactggacgtcattcatc |
10915519 |
T |
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| Q |
218 |
tgctcaagtacgattagcggtgccatttgtggtaaactagttatccgcatgtatttctttc |
278 |
Q |
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| T |
10915518 |
tgctcaagtacgattagcggtgccatttgtggtaaactagttatccgcatgtatttctttc |
10915458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 10915422 - 10915305
Alignment:
| Q |
314 |
tcactcttcagggtgactaacggtgctacatccaaaatccagagcaaagttaaccatacccaacgtgacagtcaaacatcgactccatctccagatgaaa |
413 |
Q |
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| T |
10915422 |
tcactcttcagggtgactaacggtgctacatccaaaatccagagcaaagttaaccatacccaacgcgacagtcaaacatcgactccatctccagatgaaa |
10915323 |
T |
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| Q |
414 |
gtcctagggaagagcaca |
431 |
Q |
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| T |
10915322 |
gtcctagggaagagcaca |
10915305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 10920795 - 10920711
Alignment:
| Q |
192 |
aacaactgcactggacgtcattcatctgctcaagtacgattagcggtgccatttgtggtaaactagttatccgcatgtatttctttc |
278 |
Q |
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| T |
10920795 |
aacaactgcaccagacgtcattcatctgctcaagtacgatcagcggtgtcgtctgtgggaaactagttatc--catgtatttctttc |
10920711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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