View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12348_low_4 (Length: 229)
Name: NF12348_low_4
Description: NF12348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12348_low_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 21908610 - 21908743
Alignment:
| Q |
22 |
gaagccatcattttccaatgacccacaaggagtgcttccagaagatgggtattcttcctccaagggtagtgctcttatatggaccaaagtggatccaaat |
121 |
Q |
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| T |
21908610 |
gaagccatcattttccaatgacccacaaggagtgcttccagaagttgggtattcttcctccaaaggtagtgctcttatatggaccaaagtggttccaaat |
21908709 |
T |
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| Q |
122 |
cctgtgattggttctgtttagatagtaataaaat |
155 |
Q |
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| T |
21908710 |
cctgtgattagttctgtttagatagtaataaaat |
21908743 |
T |
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Target: scaffold0001 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 59358 - 59297
Alignment:
| Q |
46 |
acaaggagtgcttccagaagatgggtattcttcctccaagggtagtgctcttatatggacca |
107 |
Q |
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| T |
59358 |
acaaggagtgcttccagaagttgggtattcttcctccaaaggtagtgctcttacatggacca |
59297 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 11595781 - 11595695
Alignment:
| Q |
18 |
agttgaagccatcatttt-ccaatgacccacaaggagtgcttccagaagatgggtattcttcctccaagggtagtgctcttatatgg |
103 |
Q |
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| T |
11595781 |
agttgaagccatcgttttgccaatgacccacaaagagcgcttccagaagttaggaatccgtcctcccaagggagtgctcttatatgg |
11595695 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37081475 - 37081560
Alignment:
| Q |
19 |
gttgaagccatcatttt-ccaatgacccacaaggagtgcttccagaagatgggtattcttcctccaagggtagtgctcttatatgg |
103 |
Q |
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| T |
37081475 |
gttgaagccatcgttttgccgatgacccacaaagagcgtttccagaagctaggaattcgtcctcccaagggagtgctcttatatgg |
37081560 |
T |
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