View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12349_low_1 (Length: 412)
Name: NF12349_low_1
Description: NF12349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12349_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 10045502 - 10045117
Alignment:
| Q |
10 |
gcagagaataatggatgttacgaaggcagtgtggcagtgcatacgaaaaccgacgaaaagcattctccaccacacattttttattttaccatataatcca |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10045502 |
gcagataataatggatgttacgaaggcagtgtggcagtgcatacgaaaaccgacgaaaagcattctccaccacacattttttattttaccatataatcca |
10045403 |
T |
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| Q |
110 |
ttcttggttaattttattcaattgtcgcagaatttcatcgctttcatactcgtacatttagcatagctcttagaatagatatatgttcatttttcaaata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
10045402 |
ttcttggttaattttattcaattgtcgcagaatttcatcgctttcatactcgtacatttagcatagctcttagaatagatatatgttca-ttgtcaaata |
10045304 |
T |
|
| Q |
210 |
tatcaccaacccttggtaaatagaaaaactcaacatcaacacttacatcgacaagacgagctttgctagctttgtcctcctctttctccaaagcatgaag |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10045303 |
tatcaccaacccttggtaaaaagaaaaactcaacatcaacacttacatcgacaagacgagctttgctagctttgtcctcctctttctccaaagcatgaag |
10045204 |
T |
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| Q |
310 |
ttccacttccagttgcattctcttcctttcaagcttgtcaatttcctctggctgactgtcaagttgaactctaacatttgcacaagc |
396 |
Q |
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| T |
10045203 |
ttccacttccagttgcattctcttcctttcaaggttgtcaatttcctctggctgactgtcaagttgaactctaacatttgcacaagc |
10045117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 231 - 393
Target Start/End: Complemental strand, 45467130 - 45466968
Alignment:
| Q |
231 |
agaaaaactcaacatcaacacttacatcgacaagacgagctttgctagctttgtcctcctctttctccaaagcatgaagttccacttccagttgcattct |
330 |
Q |
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||||||||| |||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||||| | |||||| ||||| ||||| | ||||||||| |
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| T |
45467130 |
agaaaaacttaacatccatacttacatctacaagacgggctttgctagctttgtccttctctttctctagagcatgcagttcaacttctaattgcattct |
45467031 |
T |
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| Q |
331 |
cttcctttcaagcttgtcaatttcctctggctgactgtcaagttgaactctaacatttgcaca |
393 |
Q |
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|||||||||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||| |
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| T |
45467030 |
cttcctttcaagattgtcaatttcctcaggttgactatcaagttgaactctcacattagcaca |
45466968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 42450579 - 42450682
Alignment:
| Q |
233 |
aaaaactcaacatcaacacttacatcgacaagacgagctttgctagctttgtcctcctctttctccaaagcatgaagttccacttccagttgcattctct |
332 |
Q |
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|||||||| | ||| | ||||||||| ||||||||||||||||||| ||||| || | | || |||||| | |||||||||||||||||| || ||||| |
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| T |
42450579 |
aaaaactcgaaatcgatacttacatctgcaagacgagctttgctagcgttgtcatcttttctcgccaaagaaagaagttccacttccagtttcactctct |
42450678 |
T |
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| Q |
333 |
tcct |
336 |
Q |
| |
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|||| |
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|
| T |
42450679 |
tcct |
42450682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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