View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12349_low_2 (Length: 390)

Name: NF12349_low_2
Description: NF12349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12349_low_2
NF12349_low_2
[»] chr2 (11 HSPs)
chr2 (12-300)||(11720747-11721040)
chr2 (18-186)||(11712158-11712338)
chr2 (287-372)||(11689919-11690004)
chr2 (49-128)||(11729944-11730030)
chr2 (238-300)||(11690023-11690085)
chr2 (18-94)||(11672566-11672642)
chr2 (251-310)||(11730133-11730192)
chr2 (287-372)||(11721059-11721139)
chr2 (259-310)||(11687254-11687305)
chr2 (259-310)||(11672778-11672829)
chr2 (127-200)||(11730041-11730119)
[»] chr1 (1 HSPs)
chr1 (18-184)||(7662520-7662685)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 11720747 - 11721040
Alignment:
Q  12 cagcacagacagctaaaagtgaaagagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcg-------cgagccctag 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||       | ||||||||    
T  11720747 cagcaaagacagctaaaagtgaaagagctaaaacaggcagcaagaatgagagattagccatttgaataaaactttgaaacccgaaacttgcaagccctag 11720846  T
Q  105 aataattttaagatagaaatttgt------------ggtatttgtggatgaatattggcatcgtattaaggactatttatattgaatttgtacgtggggt 192  Q
    | ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11720847 attaattttaagatagaaatttgtactatgaattgtggtatttgtggatgaatattggcatcgtattaaggcctatttatattgaatttgtacgtggggt 11720946  T
Q  193 tgcattaaggcatacgtaccacttataaatctatnnnnnnnnntgtgttggttgcaagcccacaatcacaaatatgccgtcctaacttaaaaatgaaatg 292  Q
    |||||    ||||||||||     ||||||||||           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11720947 tgcat----gcatacgtac-----ataaatctatagaaaa-----tgttggttgcattcccacaatcacaaatatgccgtcctaacttaaaaatgaaatg 11721032  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 11712338 - 11712158
Alignment:
Q  18 agacagctaaaagtgaaagagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcgcgagccctagaataattttaaga 117  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  11712338 agacaactaaaattgaaagagctaaaacagacagcaagaatgagggattagccatttgataagaactttgaaacttgcaagccctagaataattttaaga 11712239  T
Q  118 tagaaatttgt------------ggtatttgtggatgaatattggcatcgtattaaggactatttatattgaatttgtacg 186  Q
    |||||||||||            ||||||||||||||||||||||| ||||||||| |  ||| ||||| |||||||||||    
T  11712238 tagaaatttgtattatgaattgcggtatttgtggatgaatattggcttcgtattaaagcttatatatatggaatttgtacg 11712158  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 11690004 - 11689919
Alignment:
Q  287 gaaatggtcatcttatgaaatggtaataagaatcaataagctaattttatgtgctgccattcggctactccttcactaaataatct 372  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||||||||    
T  11690004 gaaatggtcatcttgtgaaatggtaataagaatcaataagctaaagttatgtgctgccatccggctagtccttcactaaataatct 11689919  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 11729944 - 11730030
Alignment:
Q  49 cagcaagaatgagagattagccatttgataacaactttgaaactc-------gcgagccctagaataattttaagatagaaatttgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||    
T  11729944 cagcaagaatgagagattagccatttgataacaactttgaaactcgaaacttgcaagccctagaataattttaagatagaaatttgt 11730030  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 11690085 - 11690023
Alignment:
Q  238 tgttggttgcaagcccacaatcacaaatatgccgtcctaacttaaaaatgaaatggtcatctt 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11690085 tgttggttgcatgcccacaatcacaaatatgccgtcctaacttaaaaatgaaatgatcatctt 11690023  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 11672566 - 11672642
Alignment:
Q  18 agacagctaaaagtgaaagagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcg 94  Q
    ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||| |||||||    
T  11672566 agacagctagaagtgaaagagctaaaagaggcagcatgagtgagagattagccatttgataagaactttaaaactcg 11672642  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 11730133 - 11730192
Alignment:
Q  251 cccacaatcacaaatatgccgtcctaacttaaaaatgaaatggtcatcttatgaaatggt 310  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11730133 cccacaagcacaaatatgccgtcctaacaaaaaaatgaaatggtcatcttatgaaatggt 11730192  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 372
Target Start/End: Original strand, 11721059 - 11721139
Alignment:
Q  287 gaaatggtcatcttatgaaatggtaataagaatcaataagctaattttatgtgctgccattcggctactccttcactaaataatct 372  Q
    |||||||||||||| ||||||||||||||||||||||||      |||| |||||||||| |||||| ||||||||||||||||||    
T  11721059 gaaatggtcatcttgtgaaatggtaataagaatcaataac-----tttacgtgctgccatccggctagtccttcactaaataatct 11721139  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 11687305 - 11687254
Alignment:
Q  259 cacaaatatgccgtcctaacttaaaaatgaaatggtcatcttatgaaatggt 310  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11687305 cacaaatatgccgtcctaacaaaaaaatgaaatggtcatcttatgaaatggt 11687254  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 11672778 - 11672829
Alignment:
Q  259 cacaaatatgccgtcctaacttaaaaatgaaatggtcatcttatgaaatggt 310  Q
    ||||||||||||||||||| | |||| ||||||||||||||| |||||||||    
T  11672778 cacaaatatgccgtcctaagtgaaaactgaaatggtcatcttttgaaatggt 11672829  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 11730041 - 11730119
Alignment:
Q  127 gtggtatttgt-ggatgaatattggcatcgtattaaggactat----ttatattgaatttgtacgtggggttgcattaa 200  Q
    ||||||||||| |||||||||||||| ||||||||| | ||||    ||||||||||||||||| |||  |||||||||    
T  11730041 gtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaa 11730119  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 7662520 - 7662685
Alignment:
Q  18 agacagctaaaagtgaaagagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcgcgagccctagaataattttaaga 117  Q
    ||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||| |  ||| |||| | | |||| |||    
T  7662520 agacaactaaaagtgaaagagctaaaacagggggcaagtatgagagattagccatttgataaaaactttgaaacttgaaagctctagtagatttttgaga 7662619  T
Q  118 tagaaatttgtggtatttgtggatgaatattggcatcgtattaaggactatttatattgaatttgta 184  Q
     || || |||| ||||| || |||||||||||| || |||| |||| || |||||||  ||||||||    
T  7662620 caggaa-ttgtagtattggttgatgaatattggtattgtatcaaggcctgtttatatgaaatttgta 7662685  T

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