View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12349_low_3 (Length: 322)

Name: NF12349_low_3
Description: NF12349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12349_low_3
NF12349_low_3
[»] chr4 (38 HSPs)
chr4 (124-308)||(51918698-51918874)
chr4 (18-103)||(51918862-51918945)
chr4 (244-308)||(56373390-56373454)
chr4 (245-308)||(31486484-31486547)
chr4 (242-308)||(29584887-29584953)
chr4 (245-308)||(3094178-3094241)
chr4 (245-308)||(38136351-38136414)
chr4 (243-308)||(41920084-41920149)
chr4 (245-309)||(28116550-28116614)
chr4 (245-308)||(20291336-20291399)
chr4 (245-308)||(39414232-39414295)
chr4 (245-308)||(7002178-7002242)
chr4 (244-308)||(19654423-19654487)
chr4 (245-308)||(3684234-3684297)
chr4 (245-308)||(12624692-12624755)
chr4 (245-308)||(14602701-14602764)
chr4 (245-308)||(20262440-20262503)
chr4 (245-308)||(22651460-22651523)
chr4 (245-308)||(37175068-37175130)
chr4 (245-306)||(5536493-5536554)
chr4 (251-308)||(20791929-20791986)
chr4 (243-308)||(51787765-51787830)
chr4 (248-308)||(34543701-34543761)
chr4 (245-308)||(48472541-48472605)
chr4 (245-308)||(13096588-13096650)
chr4 (245-308)||(24072763-24072826)
chr4 (245-308)||(25477221-25477284)
chr4 (245-308)||(26203126-26203189)
chr4 (245-308)||(30153268-30153331)
chr4 (245-308)||(33246543-33246606)
chr4 (245-308)||(37625171-37625234)
chr4 (245-308)||(39237635-39237698)
chr4 (245-308)||(45079857-45079920)
chr4 (245-308)||(46729302-46729364)
chr4 (245-308)||(50782774-50782837)
chr4 (245-308)||(52977553-52977615)
chr4 (246-308)||(10541303-10541365)
chr4 (245-308)||(10602252-10602316)
[»] chr7 (30 HSPs)
chr7 (208-308)||(31373744-31373843)
chr7 (242-308)||(48193608-48193674)
chr7 (245-308)||(40740946-40741009)
chr7 (244-308)||(27213482-27213546)
chr7 (245-308)||(6376179-6376242)
chr7 (245-308)||(26632842-26632905)
chr7 (245-308)||(28663752-28663814)
chr7 (245-308)||(37491665-37491728)
chr7 (242-308)||(29636086-29636152)
chr7 (245-308)||(4089546-4089609)
chr7 (245-308)||(20123446-20123509)
chr7 (245-308)||(21801102-21801165)
chr7 (245-308)||(40211323-40211386)
chr7 (245-308)||(42993234-42993297)
chr7 (242-308)||(48610182-48610248)
chr7 (253-306)||(29992979-29993032)
chr7 (244-308)||(21809693-21809757)
chr7 (244-308)||(25750363-25750427)
chr7 (244-308)||(46783887-46783951)
chr7 (245-308)||(21388238-21388301)
chr7 (245-308)||(26201014-26201077)
chr7 (245-308)||(37673733-37673796)
chr7 (243-308)||(19236113-19236178)
chr7 (263-308)||(21392939-21392984)
chr7 (245-309)||(27162949-27163011)
chr7 (244-301)||(27170007-27170064)
chr7 (244-308)||(35960373-35960437)
chr7 (245-305)||(37048031-37048091)
chr7 (259-307)||(41672614-41672662)
chr7 (261-309)||(44648762-44648810)
[»] chr8 (37 HSPs)
chr8 (245-308)||(34882666-34882729)
chr8 (245-308)||(31746452-31746515)
chr8 (245-308)||(26878775-26878838)
chr8 (242-308)||(5191596-5191661)
chr8 (245-307)||(22590371-22590433)
chr8 (243-308)||(14522651-14522716)
chr8 (243-308)||(14577699-14577764)
chr8 (242-307)||(16644084-16644149)
chr8 (245-304)||(36437497-36437556)
chr8 (263-308)||(12762856-12762901)
chr8 (245-308)||(7172215-7172278)
chr8 (245-304)||(17933700-17933759)
chr8 (245-308)||(24512214-24512277)
chr8 (245-308)||(24962412-24962475)
chr8 (246-308)||(36309643-36309703)
chr8 (245-308)||(37956117-37956180)
chr8 (245-308)||(43980630-43980693)
chr8 (244-308)||(25888590-25888654)
chr8 (245-308)||(57235-57298)
chr8 (245-308)||(2562777-2562840)
chr8 (245-308)||(4273955-4274018)
chr8 (245-308)||(7772508-7772571)
chr8 (245-308)||(14906597-14906660)
chr8 (245-308)||(25185026-25185089)
chr8 (245-308)||(25198285-25198348)
chr8 (245-308)||(38761405-38761468)
chr8 (245-308)||(43191524-43191587)
chr8 (245-308)||(44255449-44255512)
chr8 (245-308)||(45283829-45283892)
chr8 (243-308)||(10396277-10396340)
chr8 (258-308)||(30262585-30262635)
chr8 (242-308)||(37141719-37141785)
chr8 (246-308)||(41086971-41087033)
chr8 (250-308)||(41541550-41541608)
chr8 (242-308)||(45203752-45203817)
chr8 (243-308)||(3113580-3113645)
chr8 (245-304)||(38773399-38773459)
[»] chr1 (47 HSPs)
chr1 (245-308)||(4813507-4813570)
chr1 (242-308)||(13723523-13723589)
chr1 (243-308)||(32152151-32152216)
chr1 (244-308)||(28679866-28679929)
chr1 (245-308)||(38680470-38680533)
chr1 (242-308)||(8984706-8984772)
chr1 (242-308)||(23982637-23982703)
chr1 (246-308)||(50692405-50692467)
chr1 (215-308)||(47754687-47754780)
chr1 (244-303)||(51390584-51390644)
chr1 (245-308)||(2342899-2342962)
chr1 (242-308)||(47133484-47133551)
chr1 (245-299)||(10842324-10842378)
chr1 (250-308)||(28723698-28723756)
chr1 (242-308)||(37733938-37734004)
chr1 (245-308)||(5085134-5085197)
chr1 (245-308)||(6282469-6282532)
chr1 (245-308)||(15512826-15512889)
chr1 (245-308)||(16582528-16582591)
chr1 (245-308)||(28949009-28949072)
chr1 (245-308)||(30336054-30336117)
chr1 (245-308)||(30898608-30898671)
chr1 (245-308)||(31305313-31305376)
chr1 (250-308)||(15911597-15911655)
chr1 (246-308)||(31808017-31808079)
chr1 (242-308)||(32144303-32144369)
chr1 (245-308)||(52141220-52141285)
chr1 (243-308)||(25258323-25258388)
chr1 (247-308)||(40261592-40261653)
chr1 (245-305)||(23393560-23393620)
chr1 (244-308)||(25063204-25063268)
chr1 (257-308)||(3072146-3072197)
chr1 (245-308)||(3143398-3143461)
chr1 (245-308)||(15179405-15179468)
chr1 (245-308)||(32047437-32047500)
chr1 (245-308)||(33231835-33231898)
chr1 (245-308)||(34102331-34102394)
chr1 (245-308)||(34696928-34696991)
chr1 (245-308)||(36084965-36085028)
chr1 (245-308)||(44335284-44335347)
chr1 (245-308)||(46495304-46495367)
chr1 (245-308)||(48721913-48721976)
chr1 (242-308)||(20564767-20564833)
chr1 (242-308)||(27531091-27531157)
chr1 (245-303)||(28334265-28334323)
chr1 (242-308)||(41737117-41737183)
chr1 (245-301)||(34331871-34331926)
[»] chr3 (44 HSPs)
chr3 (242-308)||(31650713-31650779)
chr3 (245-308)||(37729077-37729140)
chr3 (245-308)||(41740021-41740084)
chr3 (245-308)||(42010863-42010926)
chr3 (248-308)||(48901565-48901625)
chr3 (248-308)||(48903131-48903191)
chr3 (245-308)||(11388116-11388179)
chr3 (245-308)||(14645937-14646000)
chr3 (258-308)||(33412021-33412071)
chr3 (242-308)||(52325551-52325617)
chr3 (243-308)||(20945348-20945413)
chr3 (245-308)||(35055782-35055844)
chr3 (246-308)||(27047226-27047288)
chr3 (245-299)||(49000447-49000501)
chr3 (245-306)||(11393917-11393978)
chr3 (245-308)||(44083621-44083685)
chr3 (248-303)||(23068032-23068086)
chr3 (245-308)||(25750522-25750585)
chr3 (245-308)||(27638125-27638188)
chr3 (245-308)||(29676787-29676850)
chr3 (245-308)||(30476036-30476099)
chr3 (245-308)||(34055910-34055973)
chr3 (245-308)||(46435778-46435841)
chr3 (242-308)||(12077791-12077857)
chr3 (242-308)||(26517263-26517329)
chr3 (243-308)||(51263075-51263140)
chr3 (244-308)||(42891413-42891477)
chr3 (245-304)||(11344553-11344612)
chr3 (248-307)||(23157093-23157152)
chr3 (245-308)||(29645353-29645416)
chr3 (245-308)||(31531473-31531536)
chr3 (245-308)||(33287861-33287924)
chr3 (245-308)||(41727286-41727349)
chr3 (245-308)||(46048517-46048580)
chr3 (245-308)||(48213620-48213683)
chr3 (245-304)||(53717578-53717637)
chr3 (243-305)||(26043012-26043074)
chr3 (242-308)||(26121324-26121390)
chr3 (278-308)||(29611862-29611892)
chr3 (246-308)||(41825185-41825247)
chr3 (279-308)||(21932955-21932984)
chr3 (267-307)||(28243776-28243816)
chr3 (276-308)||(28477411-28477443)
chr3 (248-308)||(48309443-48309502)
[»] chr6 (18 HSPs)
chr6 (243-308)||(12514632-12514697)
chr6 (245-308)||(31945959-31946022)
chr6 (246-308)||(3887989-3888051)
chr6 (245-308)||(3729385-3729448)
chr6 (245-308)||(5895727-5895790)
chr6 (245-308)||(10669321-10669384)
chr6 (247-308)||(28238361-28238422)
chr6 (263-308)||(33607369-33607414)
chr6 (244-308)||(15981789-15981853)
chr6 (244-308)||(16327118-16327182)
chr6 (245-308)||(4250705-4250768)
chr6 (245-308)||(19838927-19838990)
chr6 (243-308)||(8644843-8644908)
chr6 (244-308)||(31780119-31780183)
chr6 (245-308)||(1763809-1763872)
chr6 (245-308)||(11302851-11302914)
chr6 (245-308)||(22410890-22410953)
chr6 (244-308)||(16350516-16350580)
[»] chr2 (35 HSPs)
chr2 (242-308)||(43709911-43709978)
chr2 (242-308)||(13477079-13477145)
chr2 (242-308)||(21012846-21012912)
chr2 (245-308)||(247656-247719)
chr2 (245-308)||(4398570-4398632)
chr2 (245-308)||(8384018-8384081)
chr2 (245-308)||(20361979-20362042)
chr2 (245-308)||(27297573-27297636)
chr2 (245-308)||(32677471-32677534)
chr2 (242-308)||(44424588-44424654)
chr2 (242-308)||(45214718-45214784)
chr2 (243-308)||(2131751-2131816)
chr2 (244-309)||(44274712-44274777)
chr2 (257-305)||(22590437-22590485)
chr2 (245-308)||(14527620-14527682)
chr2 (245-308)||(17251007-17251070)
chr2 (245-308)||(17663620-17663683)
chr2 (242-308)||(20426933-20427000)
chr2 (245-308)||(24774861-24774924)
chr2 (245-308)||(37355032-37355095)
chr2 (245-308)||(40346127-40346190)
chr2 (243-304)||(6275617-6275679)
chr2 (242-308)||(9718218-9718284)
chr2 (246-308)||(34042102-34042164)
chr2 (248-308)||(45150782-45150842)
chr2 (245-308)||(3645319-3645382)
chr2 (245-308)||(15851527-15851590)
chr2 (245-308)||(26512067-26512130)
chr2 (245-304)||(41865712-41865771)
chr2 (245-308)||(44421445-44421508)
chr2 (245-308)||(3237717-3237782)
chr2 (258-308)||(11071677-11071727)
chr2 (245-306)||(41665706-41665767)
chr2 (260-308)||(14420688-14420736)
chr2 (245-305)||(42250925-42250985)
[»] scaffold0013 (1 HSPs)
scaffold0013 (242-308)||(49129-49195)
[»] scaffold1091 (1 HSPs)
scaffold1091 (245-308)||(1959-2022)
[»] chr5 (24 HSPs)
chr5 (245-308)||(3559072-3559135)
chr5 (245-308)||(18729584-18729647)
chr5 (245-308)||(21912116-21912179)
chr5 (245-308)||(29866185-29866248)
chr5 (245-308)||(32067824-32067887)
chr5 (245-308)||(43060555-43060618)
chr5 (242-308)||(20946080-20946146)
chr5 (246-308)||(41521185-41521247)
chr5 (245-304)||(10656588-10656645)
chr5 (253-308)||(600769-600824)
chr5 (245-308)||(11980712-11980775)
chr5 (245-308)||(14044543-14044606)
chr5 (245-308)||(27642498-27642561)
chr5 (245-308)||(30348122-30348185)
chr5 (245-308)||(39690531-39690594)
chr5 (244-308)||(7510601-7510665)
chr5 (244-308)||(27798151-27798215)
chr5 (244-308)||(31642514-31642577)
chr5 (208-294)||(38972185-38972270)
chr5 (242-308)||(4745119-4745186)
chr5 (245-308)||(16969370-16969433)
chr5 (245-308)||(27587834-27587897)
chr5 (245-308)||(36177288-36177351)
chr5 (246-308)||(15898508-15898570)
[»] scaffold0012 (1 HSPs)
scaffold0012 (242-308)||(99863-99929)
[»] scaffold0038 (1 HSPs)
scaffold0038 (247-308)||(38523-38584)
[»] scaffold0005 (1 HSPs)
scaffold0005 (245-308)||(214614-214677)
[»] scaffold0864 (1 HSPs)
scaffold0864 (257-305)||(3095-3143)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 51918874 - 51918698
Alignment:
Q  124 gtacctttattaattattatgatgcctagttactagttagcaataaaaacggatactcatatacgtttgtttaggataaacaattactccatccgtctct 223  Q
    ||||||||||||||||||||||||||||||||       ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |   ||    
T  51918874 gtacctttattaattattatgatgcctagtta-------gcaataaaaactgatactcctatacgtttgtttaggataaacaattactccatctgatcct 51918782  T
Q  224 atatctaaacatttttaggcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||  |||||||||||||||||||| |||||   |||| |||||||||||||||||||||||||||| ||||    
T  51918781 atatctaaacatttttctgcatttttcacatttattaa-aaaaaaaattaatgcaattaatgtgtctattttgtgtgttagtatt 51918698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 51918945 - 51918862
Alignment:
Q  18 catactttattgagaagtgatttagatttatgtttgtaacaaaccaagaattatccctgaaccgctccattatatacctttattaa 103  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51918945 catactttattgagaagtgatt--gatttatgtttgtaacaaaccaagaattatccctgaaccgctccattatgtacctttattaa 51918862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 56373454 - 56373390
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  56373454 atttttcacatttcttaagaaaaattgttagtgcaattaatgtgtttattttgtgtgttaatatt 56373390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 31486484 - 31486547
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  31486484 tttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtgttaatatt 31486547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 29584887 - 29584953
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||||||||| ||||||||||||||    
T  29584887 gcatttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattctgtgtgttaatatt 29584953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3094178 - 3094241
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  3094178 tttttgacatttcttaagaaaagttgttaaagtaattaatgtgtctattttgtgtgttaatatt 3094241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 38136351 - 38136414
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  38136351 tttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatatt 38136414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 41920149 - 41920084
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||| ||||||  ||||||||| | |||||||||||||||||||||    
T  41920149 catttttcacatttcttaagaaaagttgttagtgcaattaatatttctattttgtgtgttaatatt 41920084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 28116614 - 28116550
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatattg 309  Q
    |||||||||||| ||||||||| ||||||  | ||||||| ||||||||||||||||||||||||    
T  28116614 tttttcacattttttaagaaaagttgttagtgtaattaatatgtctattttgtgtgttaatattg 28116550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 20291336 - 20291399
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||| ||| | ||||||||||||||||||||| |||||||||    
T  20291336 tttttcacatttcttaagaaaagttggtaatgtaattaatgtgtctattttgtgggttaatatt 20291399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 39414232 - 39414295
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||    
T  39414232 tttttcatatttcttaagaaaagttgataatgcaattaatatgtctattttgtgtgttaatatt 39414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 7002178 - 7002242
Alignment:
Q  245 tttttcacatttatt-aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| || ||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  7002178 tttttcacatttctttaagaaaaattgttaatgcaattaatgtttatattttatgtgttaatatt 7002242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 19654423 - 19654487
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| |||||||||| |||||  | |||||||||||||||||| |||||| |||||    
T  19654423 atttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctattttatgtgttgatatt 19654487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 3684297 - 3684234
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||||||| |||||    | |||||||||||||||||||||| ||||||||    
T  3684297 tttttcacatttattaagaaagattgtcggtgtaattaatgtgtctattttgtgtattaatatt 3684234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 12624692 - 12624755
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||| ||||||| ||||||||||||    
T  12624692 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgactattttatgtgttaatatt 12624755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 14602764 - 14602701
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||| ||| ||||||||||||    
T  14602764 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatatt 14602701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 20262503 - 20262440
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  20262503 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 20262440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 22651460 - 22651523
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| || |||| | ||||||||||| |||||||| ||||||||||    
T  22651460 tttttcacatttcttaagaaaatttattaatgtaattaatgtgtttattttgtatgttaatatt 22651523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 37175130 - 37175068
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||||   | |||||||||||||||||||||||||||||||    
T  37175130 tttttcacatttcttaagaaaagttgttgt-gtaattaatgtgtctattttgtgtgttaatatt 37175068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 5536493 - 5536554
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaata 306  Q
    |||||||||||| |||||||||||||| |  | ||||||||||||| ||||| |||||||||    
T  5536493 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgcgtgttaata 5536554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 20791929 - 20791986
Alignment:
Q  251 acatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||| ||||||||| ||| ||  ||||||||| |||||||||||||||||||||||    
T  20791929 acatttcttaagaaaagttggtagtgcaattaatatgtctattttgtgtgttaatatt 20791986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 51787765 - 51787830
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||| ||||    | ||||||||||||| |||||||||||||||||    
T  51787765 catttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaatatt 51787830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 34543701 - 34543761
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||| ||||||||| ||||    | |||||||||||||||||||||||||||||||    
T  34543701 ttcacatttcttaagaaaagttgtccgtgtaattaatgtgtctattttgtgtgttaatatt 34543761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 48472605 - 48472541
Alignment:
Q  245 tttttcacatttatt-aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| || ||||||| |||| |  | |||||||||||||||||||||||||||||||    
T  48472605 tttttcacatttttttaagaaaagttgtcagtgtaattaatgtgtctattttgtgtgttaatatt 48472541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 13096650 - 13096588
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | ||||||||||||| | |||||||||||||||    
T  13096650 tttttcacattt-ttaagaaaagttgttagtgtaattaatgtgtctgtgttgtgtgttaatatt 13096588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 24072763 - 24072826
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||| |||| || | ||||||||||||| |||| ||||||||||||    
T  24072763 ttttttacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttttgtgttaatatt 24072826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 25477221 - 25477284
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||| ||||||||||||    
T  25477221 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttatgtgttaatatt 25477284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 26203126 - 26203189
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||||||||||||| ||||||  | ||||||||| | |||||| ||||||||||||    
T  26203126 ttttccacatttattaagaaaagttgttactgtaattaatgtatatattttatgtgttaatatt 26203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 30153331 - 30153268
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| ||||||||| |||||||    
T  30153331 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgataatatt 30153268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 33246606 - 33246543
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||| ||||||||| ||||||  | ||||||  |||||||||||||||||||||||    
T  33246606 ttttccacattttttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatatt 33246543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 37625234 - 37625171
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |    ||||||||||| |||||||||||||||||||    
T  37625234 tttttcacatttcttaagaaaagttgtcagtataattaatgtgtttattttgtgtgttaatatt 37625171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 39237698 - 39237635
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||| ||| |||||||||||||||||    
T  39237698 tttttcacattttttaagaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaatatt 39237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 45079920 - 45079857
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| | ||||  ||||||||  | |||||||||||||||||||||    
T  45079920 tttttcacatttcttaagaaaagtagttagtgcaattaacatatctattttgtgtgttaatatt 45079857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 46729302 - 46729364
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  46729302 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 46729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 50782774 - 50782837
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||| ||||||||    
T  50782774 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtcttaatatt 50782837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 52977553 - 52977615
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||  |||| |||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  52977553 tttttcacattc-ttaaaaaaagttgttaatgcaattcatgtgtctattttatgtgttaatatt 52977615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 10541365 - 10541303
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| |||||| | ||||||| ||||||| ||||||||||| | |||||||||| ||||||||    
T  10541365 tttttacatttctaaagaaaagttgttaatgcaattaatgtatatattttgtgtattaatatt 10541303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 10602316 - 10602252
Alignment:
Q  245 tttttcacatt-tattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| | ||||||||| ||| ||  | ||||||| |||||||||||||||||||||||    
T  10602316 tttttcacattcttttaagaaaagttggtagtgtaattaatttgtctattttgtgtgttaatatt 10602252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 31373843 - 31373744
Alignment:
Q  208 tactccatccgtctctatatctaaacatttttaggcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    |||||| ||| || |||||||||| || |||| | |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31373843 tactccctccatccctatatctaagcactttttg-catttttcacatttcttaagaaaaattgttagggcaattaatgtgtctattttgtgtgttaatat 31373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 48193608 - 48193674
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  48193608 gcatttttcacattttttaagaaaaattgttagtgtaattaatgtgtctattttgtgtgttaatatt 48193674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 40740946 - 40741009
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| | ||||||| |||||||||||||||||||||||    
T  40740946 tttttcacatttcttaagaaaagttgttaatgtaattaatatgtctattttgtgtgttaatatt 40741009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 27213482 - 27213546
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| ||||||  |||| |||| |||||||||||||||||||||||    
T  27213482 atttttcacatttcttaagaaaagttgttagtgcaactaatatgtctattttgtgtgttaatatt 27213546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 6376242 - 6376179
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||  | ||||||||| ||| |||||||||||||||||    
T  6376242 tttttcacatttcttaagaaaaattgttagtgtaattaatgtctctgttttgtgtgttaatatt 6376179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 26632842 - 26632905
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||  | | |||||||||||||||| ||||||||||||    
T  26632842 tttttcacattttttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaatatt 26632905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 28663752 - 28663814
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||  |||||||  ||||||||||||||||||||||||||||||||    
T  28663752 tttttcacatttcttaagaaag-ttgttaatacaattaatgtgtctattttgtgtgttaatatt 28663814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 37491728 - 37491665
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  |||||||||||||||||||| | ||||||||||    
T  37491728 tttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttatatgttaatatt 37491665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 29636152 - 29636086
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||| ||||||||| |||| || | ||||||||||||| |||||||||||||||||    
T  29636152 gcattttacacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaatatt 29636086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4089609 - 4089546
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  4089609 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 4089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 20123446 - 20123509
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  20123446 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 20123509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 21801165 - 21801102
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||  | | ||||||||||||| |||||||||||||||||    
T  21801165 tttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttgtgtgttaatatt 21801102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 40211386 - 40211323
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| |||||||||||||||   | ||||||||||||| |||||||||||||||||    
T  40211386 tttttcatattttttaagaaaaattgtttgtgtaattaatgtgtctgttttgtgtgttaatatt 40211323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 42993297 - 42993234
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||| |||||||  ||||||| ||||||||||| ||||||||||||    
T  42993297 ttttttacatttcttaagaaaagttgttaatacaattaacgtgtctattttatgtgttaatatt 42993234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 48610248 - 48610182
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||| ||||||||    
T  48610248 gcatttttcacattttttaagaaaagttgtcactgtaattaatgtgtctgttttgtgtattaatatt 48610182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 29992979 - 29993032
Alignment:
Q  253 atttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaata 306  Q
    |||| ||||||||| ||||||  |||||||||||||||||||||| ||||||||    
T  29992979 atttcttaagaaaagttgttagtgcaattaatgtgtctattttgtatgttaata 29993032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 21809757 - 21809693
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| ||||  | | ||||||||||||| |||| ||||||||||||    
T  21809757 atttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttttgtgttaatatt 21809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 25750363 - 25750427
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| |||| |||| |||| |  | ||||||||||||| |||||||||||||||||    
T  25750363 atttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 25750427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 46783951 - 46783887
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| || |||  | ||||||||||||||| || ||||||||||||    
T  46783951 atttttcacatttcttaagaaaagttattagtgaaattaatgtgtctatcttatgtgttaatatt 46783887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 21388238 - 21388301
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||    | ||||||||||||| |||||||||||||||||    
T  21388238 tttttcacatttcttaagaaaatttgtcggtgtaattaatgtgtctgttttgtgtgttaatatt 21388301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 26201077 - 26201014
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| ||||||||| || |||  ||||||| |||||||||||||||| ||||||||    
T  26201077 tttttcatatttcttaagaaaagttattagtgcaattattgtgtctattttgtgtattaatatt 26201014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 37673733 - 37673796
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||  |||| |  | ||||||||||||| |||||||||||||||||    
T  37673733 tttttcacatttcttaagaaatgttgtgagtgtaattaatgtgtctgttttgtgtgttaatatt 37673796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 19236178 - 19236113
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||  |||||||| ||||||  | ||||||||||||  |||||| ||||||||||    
T  19236178 catttttcacatttcgtaagaaaagttgttagtgtaattaatgtgtcggttttgtatgttaatatt 19236113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 21392984 - 21392939
Alignment:
Q  263 aaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||  ||||||||||||||||||||| |||||||||||    
T  21392984 aaaatttgttagtgcaattaatgtgtctattttgagtgttaatatt 21392939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 27163011 - 27162949
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatattg 309  Q
    |||||||||||| ||||| ||| ||||||  ||||||||||||  |||||||||| |||||||||    
T  27163011 tttttcacatttcttaagtaaagttgttagtgcaattaatgtg--tattttgtgttttaatattg 27162949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 27170007 - 27170064
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgt 301  Q
    ||||||||||||| |||||| ||  |||||  ||||||||| ||||||||||||||||    
T  27170007 atttttcacatttcttaagacaacatgttagtgcaattaatttgtctattttgtgtgt 27170064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 35960373 - 35960437
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||  |||| |||||||||||   ||||||||||||||||||| ||| || |||||    
T  35960373 atttttcacattccttaaaaaaaattgttagtacaattaatgtgtctattttatgtatttatatt 35960437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 37048031 - 37048091
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    |||||||||||| ||||||||| || | |  | ||||||||||||| ||||||||||||||    
T  37048031 tttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaat 37048091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 41672662 - 41672614
Alignment:
Q  259 taagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    |||||||| ||||||  | |||||||||||||||||||||||| |||||    
T  41672662 taagaaaacttgttagtgtaattaatgtgtctattttgtgtgtgaatat 41672614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 44648810 - 44648762
Alignment:
Q  261 agaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatattg 309  Q
    |||||| ||||||| | ||| |||||||||||||||| |||||||||||    
T  44648810 agaaaagttgttaatgtaatcaatgtgtctattttgtatgttaatattg 44648762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 34882666 - 34882729
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34882666 tttttcacattttttaagaaaaattgttaatgcaattaatgtgtctattttgtgtgttaatatt 34882729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 31746515 - 31746452
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31746515 tttttcacatttcttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatatt 31746452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 26878838 - 26878775
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  26878838 tttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctattttgtgtgttaatatt 26878775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 5191661 - 5191596
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  5191661 gcatttttcacatttcttaagaaaaattgttag-gcaattaatgtgtctgttttgtgtgttaatatt 5191596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 22590371 - 22590433
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    |||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||||||||    
T  22590371 tttttcacatttcttaagaaaatttgttagtgcaattaatgtgtctattttttgtgttaatat 22590433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 14522716 - 14522651
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||||||||||  | ||||||||||| | |||||||||||||||||    
T  14522716 catttttcacatttcttaagaaaaattgttagtgtaattaatgtgtatgttttgtgtgttaatatt 14522651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 14577764 - 14577699
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||| ||||||  | |||||||||||||||||||| ||||||||||    
T  14577764 catttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtttgttaatatt 14577699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 16644149 - 16644084
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    ||||||||||||||| ||||||||| ||||||  | ||||||||||| ||||||||||||||||||    
T  16644149 gcatttttcacatttcttaagaaaagttgttagtgtaattaatgtgtatattttgtgtgttaatat 16644084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 36437497 - 36437556
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||| ||||||| |||||||||| |||||  |||||||||||||||||||||||||||||    
T  36437497 ttttccacattttttaagaaaaaatgttagtgcaattaatgtgtctattttgtgtgttaa 36437556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 12762856 - 12762901
Alignment:
Q  263 aaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  12762856 aaaagttgttaatgcaattaatgtgtctattttgtgtgttaatatt 12762901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 7172215 - 7172278
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| || ||   | |||||||||||||||||||||||||||||||    
T  7172215 tttttcacatttcttaagaaaactttttggtgtaattaatgtgtctattttgtgtgttaatatt 7172278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 17933700 - 17933759
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    ||||||||||||  |||||||||||||  | | |||||||||||||||||||||||||||    
T  17933700 tttttcacatttcgtaagaaaaattgtcgatgtaattaatgtgtctattttgtgtgttaa 17933759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 24512277 - 24512214
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  24512277 tttttcacattttttaagaaaatttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 24512214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 24962475 - 24962412
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  24962475 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 24962412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 36309703 - 36309643
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| ||||  ||| |||||| || |||||||||||||||||||||||||||||||    
T  36309703 ttttcacatttcttaa--aaatttgttaccgtaattaatgtgtctattttgtgtgttaatatt 36309643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 37956117 - 37956180
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  37956117 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 37956180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 43980693 - 43980630
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  43980693 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 43980630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 25888590 - 25888654
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||| |||||| ||||||||| ||||||  | ||||||| |||||||||||| ||||||||||    
T  25888590 attttttacatttcttaagaaaagttgttagtgtaattaatatgtctattttgtatgttaatatt 25888654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 57298 - 57235
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||    | ||||||||||||| |||||||||||||||||    
T  57298 tttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaatatt 57235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 2562840 - 2562777
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||| ||| |  | ||||||||||||| |||||| ||||||||||    
T  2562840 tttttcacatttcttaagaaaaactgtcagtgtaattaatgtgtctgttttgtatgttaatatt 2562777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4274018 - 4273955
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||| |||||||  | ||||||||||| | |||| ||||||||||||    
T  4274018 tttttcacatttcttaagaaatattgttagtgtaattaatgtgtttgttttatgtgttaatatt 4273955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 7772508 - 7772571
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  7772508 ttttttacattttttaagaaaagttgtcattgtaattaatgtgtctgttttgtgtgttaatatt 7772571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 14906597 - 14906660
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| || | |||| || |||| | ||||||| |||||||||||||||||||||||    
T  14906597 tttttcacattttttcataaaagttattaatgtaattaatatgtctattttgtgtgttaatatt 14906660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 25185026 - 25185089
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | || |||||||||| |||||||||||||||||    
T  25185026 tttttcacatttcttaagaaaagttgtcagtgtaactaatgtgtctgttttgtgtgttaatatt 25185089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 25198285 - 25198348
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||| | |||||||||||||||||    
T  25198285 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatatt 25198348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 38761468 - 38761405
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||||| |||| |||| |  | ||||||||||||| |||||||||||||||||    
T  38761468 tttttcatatttattaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 38761405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 43191587 - 43191524
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| |||||||||| ||||||   | |||||||||||||||| ||||||||||||    
T  43191587 ttttttacatttcttaagaaaaaatgttaatttagttaatgtgtctattttatgtgttaatatt 43191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 44255449 - 44255512
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||  ||| | || |||||||||| || |||||||||||||||||    
T  44255449 tttttcacatttgttaagaaaagatgtgagcgtaattaatgtgccttttttgtgtgttaatatt 44255512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 45283892 - 45283829
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| |||||||||||| | || | ||||||||||||| |||| ||||||||||||    
T  45283892 tttttcaaatttcttaagaaaaattatcaatgtaattaatgtgtctgttttatgtgttaatatt 45283829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 10396340 - 10396277
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||||||| |||| || | ||||||  ||| | |||||||||||||||||    
T  10396340 catttttcacatttattaagaaaagttgtcaatgtaattaa--tgtttgttttgtgtgttaatatt 10396277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 30262635 - 30262585
Alignment:
Q  258 ttaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| |||| ||||||  |||||||||||||||||||||| ||||||||||    
T  30262635 ttaaaaaaagttgttagtgcaattaatgtgtctattttgtatgttaatatt 30262585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 37141719 - 37141785
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| |||| |||| |||| |  | ||||||||| ||| |||||||||||||||||    
T  37141719 gcatttttcacattttttaaaaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaatatt 37141785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 41086971 - 41087033
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| |||||||| ||||| |  | |||||||||||||  ||||||||||||||||    
T  41086971 ttttcacatttcttaagaaatattgtcagtgtaattaatgtgtctgatttgtgtgttaatatt 41087033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 41541550 - 41541608
Alignment:
Q  250 cacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||||||| ||||   ||| ||||||||||||||||||||| ||||||    
T  41541550 cacatttcttaagaaaaatagttagtacaactaatgtgtctattttgtgtgtcaatatt 41541608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 45203752 - 45203817
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||||| ||||||||  || |||  |||||||||||||||||||||| ||||||||||    
T  45203752 gcattttttacatttcttaagaaatttt-ttagtgcaattaatgtgtctattttgtatgttaatatt 45203817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 3113645 - 3113580
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| |||| ||||||| | |  | ||||||| ||||| |||||||||||||||||    
T  3113645 catttttcacatttcttaaaaaaaattatcagtgtaattaatatgtctgttttgtgtgttaatatt 3113580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 38773459 - 38773399
Alignment:
Q  245 tttttcacatttattaagaaaaa-ttgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||||||||||| |||| ||||| |||| |  ||||||||||||||| |||||||||||||    
T  38773459 tttttcacatttcttaaaaaaaagttgtcagtgcaattaatgtgtctgttttgtgtgttaa 38773399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4813570 - 4813507
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  4813570 tttttcacatttcttaagaaaagttgttaatgcaattaatgtgtctattttgtgtgttaatatt 4813507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 13723589 - 13723523
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  13723589 gcatttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtattaatatt 13723523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 32152151 - 32152216
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||| |||||   |||||||||||||||||||||||||||||||||    
T  32152151 catttttcacatttcttaagaaaagttgttggtgcaattaatgtgtctattttgtgtgttaatatt 32152216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 28679929 - 28679866
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  28679929 atttttcacattt-ttaaaaaaagttgttaatgcaattaatgtgtctattttgtgtgttaatatt 28679866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 38680470 - 38680533
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  38680470 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 38680533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 8984772 - 8984706
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||| ||||||||||  | ||||||||||||| |||||||||||||||||    
T  8984772 gcatttttcacattttttaaggaaaattgttagtgtaattaatgtgtctgttttgtgtgttaatatt 8984706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 23982703 - 23982637
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| |||| || | ||||||||||||| |||||||||||||||||    
T  23982703 gcatttttcacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaatatt 23982637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 50692405 - 50692467
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||| ||||    
T  50692405 ttttcacatttcttaagaaaagttgtcaatgcaattaatgtgtctattttgtgtgttagtatt 50692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 47754780 - 47754687
Alignment:
Q  215 tccgtctctatatctaaacatttttaggcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||||| ||||| |||| |   ||||| |||||| |||| |||||||||||  |||||||||||||||||||| ||||||||||||    
T  47754780 tccgtttctatatccaaacactttttgcatttttttacatttcttaaaaaaaattgttagtgcaattaatgtgtctattttttgtgttaatatt 47754687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 51390644 - 51390584
Alignment:
Q  244 atttttcacatttattaa-gaaaaattgttaacgcaattaatgtgtctattttgtgtgtta 303  Q
    ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  51390644 atttttcacatttcttaaagaagaattgttaatgcaattaatgtgtctattttgtgtgtta 51390584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 2342899 - 2342962
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||    | |||||||||||||||||||||||||||||    
T  2342899 tttttcacattttttaagaaaaattgttagtttacttaatgtgtctattttgtgtgttaatatt 2342962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 47133551 - 47133484
Alignment:
Q  242 gcatttttcacatttattaagaaaaa-ttgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| |||| ||||| ||||||| | ||||||||||| |||||||||||||||||||    
T  47133551 gcatttttcacatttcttaaaaaaaaattgttaatgtaattaatgtgtttattttgtgtgttaatatt 47133484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 10842324 - 10842378
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgt 299  Q
    |||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||    
T  10842324 tttttcacatttcttaagaaaagttgttaatgcaattaatatgtctattttgtgt 10842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 28723756 - 28723698
Alignment:
Q  250 cacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  28723756 cacattttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 28723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 37734004 - 37733938
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||| ||||||||||||  ||||||||| |||| ||||||||| ||||||||    
T  37734004 gcatttttcacattttttacgaaaaattgttagtgcaattaatttgtccattttgtgttttaatatt 37733938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 5085197 - 5085134
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  5085197 tttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 5085134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 6282469 - 6282532
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||  |||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  6282469 tttttcacgtttcataagaaaaattgttagtacaattaatgtgtctattttatgtgttaatatt 6282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 15512889 - 15512826
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  15512889 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 15512826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 16582528 - 16582591
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  16582528 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 16582591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 28949072 - 28949009
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  28949072 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 28949009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 30336054 - 30336117
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||    | |||||||||||||||||||||||||||||||    
T  30336054 tttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctattttgtgtgttaatatt 30336117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 30898671 - 30898608
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||||| |  | ||||||||||||| |||| ||||||||||||    
T  30898671 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttatgtgttaatatt 30898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 31305313 - 31305376
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||||| |||||   | |||||||||||||||||||| || |||||||    
T  31305313 tttttcacatttattaagaaaagttgttggtgtaattaatgtgtctattttgtatgctaatatt 31305376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 15911655 - 15911597
Alignment:
Q  250 cacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||||| ||||||  | | |||||||||||||||||||||||||||||    
T  15911655 cacatttcttaagaaaagttgttagtgtacttaatgtgtctattttgtgtgttaatatt 15911597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 31808079 - 31808017
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| || || |||||| ||||||  | |||||||||||||||||||||||||||||||    
T  31808079 ttttcacacttcttgagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 31808017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 32144303 - 32144369
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||||| ||||||||| |||||   ||| ||||||||||||||||||| |||||||||    
T  32144303 gcattttttacatttcttaagaaaagttgttggtgcatttaatgtgtctattttgtgcgttaatatt 32144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 52141285 - 52141220
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatg--tgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||| |||  | ||||||||  |||||||||||||||||||||||    
T  52141285 tttttcacattttttaagaaaaattattagtgtaattaatgcgtgtctattttgtgtgttaatatt 52141220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 25258323 - 25258388
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||| |||| ||||||||| ||||||  |||||||||||||||||||| ||| || |||||    
T  25258323 catttttcatattttttaagaaaagttgttagtgcaattaatgtgtctattttatgtcttgatatt 25258388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 40261592 - 40261653
Alignment:
Q  247 tttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| ||| ||||| | ||||  ||||||||||||| |||||||||||||||||||    
T  40261592 tttcacatttcttatgaaaagtagttagtgcaattaatgtgtttattttgtgtgttaatatt 40261653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 23393620 - 23393560
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    ||||||| |||| ||||||||| ||||||| | ||||||||| |||||||||||| |||||    
T  23393620 tttttcatattttttaagaaaagttgttaatgtaattaatgtatctattttgtgtattaat 23393560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 25063204 - 25063268
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||| | |||| ||||||||| || |||| |||| |||||||||| |||||||||||||||||    
T  25063204 attttttatattttttaagaaaagttattaatgcaaataatgtgtctgttttgtgtgttaatatt 25063268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 3072146 - 3072197
Alignment:
Q  257 attaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| ||||||  ||||||||||||| |||||| ||||||||||||    
T  3072146 attaagaaaagttgttagtgcaattaatgtgtttattttatgtgttaatatt 3072197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3143398 - 3143461
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | |||||||||||||  ||||||||||||||||    
T  3143398 tttttcacatttcttaagaaaagttgtcattgtaattaatgtgtctgctttgtgtgttaatatt 3143461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 15179405 - 15179468
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||||| |  | |||||||||||||||||| || || ||||||    
T  15179405 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgcgtaaatatt 15179468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 32047437 - 32047500
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||| | |||||||||||||||||    
T  32047437 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatatt 32047500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 33231835 - 33231898
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||| |||| |  | ||||||||||||| |||||||||||||||||    
T  33231835 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 33231898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 34102331 - 34102394
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| |||||||||||| | |  | ||||||||||||| |||||||||||||||||    
T  34102331 tttttcaaattttttaagaaaaattttcattgtaattaatgtgtctgttttgtgtgttaatatt 34102394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 34696991 - 34696928
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||| ||||| |||||||||||||||||    
T  34696991 tttttcacattttttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtgttaatatt 34696928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 36084965 - 36085028
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||| | |  | ||||||||| ||| |||||||||||||||||    
T  36084965 tttttcacattttttaagaaaaattatcagtgtaattaatgtatctgttttgtgtgttaatatt 36085028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 44335284 - 44335347
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||| |||| |  | ||||||||||||| |||||||||||||||||    
T  44335284 tttttcacatttcttaataaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 44335347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 46495304 - 46495367
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| | || ||||||||| |  | ||||||||||||| |||||||||||||||||    
T  46495304 tttttcacatttttaaaaaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 46495367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 48721976 - 48721913
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||  ||| |  | ||||||||||||| |||||||||||||||||    
T  48721976 tttttcacatttcttaagaaaagctgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 48721913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 20564767 - 20564833
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| ||| ||  | || ||||||||||| ||| ||||||||||||    
T  20564767 gcatttttcacatttgttaagaaaagttgatagtgtaactaatgtgtctactttatgtgttaatatt 20564833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 27531091 - 27531157
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| |||| |    ||||||||||| | |||||||||||||||||    
T  27531091 gcatttttcacatttcttaagaaaagttgtcagtataattaatgtgtttgttttgtgtgttaatatt 27531157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 28334323 - 28334265
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgtta 303  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| ||||||||||||    
T  28334323 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgtta 28334265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 41737117 - 41737183
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||| ||||| || ||||||||| ||||||  | ||||||  |||||||||||||||||||||||    
T  41737117 gcatttatcacacttcttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatatt 41737183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 34331871 - 34331926
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgt 301  Q
    |||||||||||| |||| |||||||||||   ||| |||||||||||||||||||||    
T  34331871 tttttcacattt-ttaaaaaaaattgttagtacaactaatgtgtctattttgtgtgt 34331926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 31650779 - 31650713
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||||    
T  31650779 gcatttttcacatttattaaaaaaaattgttaatgcaattaatgtgtctattttatgtggtaatatt 31650713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 37729140 - 37729077
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  37729140 tttttcacatttcttaagaaaaattgttaatataattaatgtgtctattttgtgtgttaatatt 37729077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 41740084 - 41740021
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  41740084 tttttcacattttttaagaaaaattattaatacaattaatgtgtctattttgtgtgttaatatt 41740021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 42010863 - 42010926
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  42010863 tttttcacatttcttaagaaaatttgttaatgtaattaatgtgtctattttgtgtgttaatatt 42010926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 48901625 - 48901565
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||||    
T  48901625 ttcacatttattaagaaaaatagttagtgcaattaatttgtctattttgtgtgttaatatt 48901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 48903191 - 48903131
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||||    
T  48903191 ttcacatttattaagaaaaatagttagtgcaattaatttgtctattttgtgtgttaatatt 48903131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 11388116 - 11388179
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||  | ||||||||||||||||||| |||||||||||    
T  11388116 tttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattttgcgtgttaatatt 11388179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 14646000 - 14645937
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  14646000 tttttcacattttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 14645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 33412071 - 33412021
Alignment:
Q  258 ttaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  33412071 ttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatatt 33412021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 52325617 - 52325551
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| |||||||||| |||||  | |||||||||||||||||| ||||||||||||    
T  52325617 gcatttttcacatttcttaagaaaaaatgttagtgtaattaatgtgtctattttatgtgttaatatt 52325551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 20945413 - 20945348
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| ||||||||| ||||||  | |||||||||||||||||| ||||||||||||    
T  20945413 catttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttatgtgttaatatt 20945348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 35055782 - 35055844
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| | ||||||||  |||||||||||||||||||||||||||||    
T  35055782 tttttcacatttcttaagaaaagtagttaacgct-ttaatgtgtctattttgtgtgttaatatt 35055844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 27047288 - 27047226
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||  |||||||||  |||||  |||||||||||||||||||||||||||||||||    
T  27047288 ttttcacattccttaagaaaagctgttagtgcaattaatgtgtctattttgtgtgttaatatt 27047226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 49000447 - 49000501
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgt 299  Q
    |||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||    
T  49000447 tttttcacattttttaagaaaagttgttgatgcaattaatgtgtctattttgtgt 49000501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 11393917 - 11393978
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaata 306  Q
    |||||||||||| |||| |||| ||||||  | |||||||||||||||||||||||||||||    
T  11393917 tttttcacattttttaaaaaaagttgttagtgtaattaatgtgtctattttgtgtgttaata 11393978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 44083621 - 44083685
Alignment:
Q  245 tttttcacatttatt-aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| || ||||||||||||||  | ||||||||| |||||||||||||||||||||    
T  44083621 tttttcacatttttttaagaaaaattgttattgtaattaatgtatctattttgtgtgttaatatt 44083685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 23068032 - 23068086
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgtta 303  Q
    ||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  23068032 ttcacattt-ttaagaaaaattgttattgtaattaatgtgtctattttgtgtgtta 23068086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 25750522 - 25750585
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||  ||||||| | ||||||| |||||||||||||||||||||||    
T  25750522 ttttttacatttcttaagaaaggttgttaatgtaattaatttgtctattttgtgtgttaatatt 25750585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 27638188 - 27638125
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| || |||  | ||||||||| |||||||||||||||||||||    
T  27638188 tttttcacatttcttaagaaaagttattagtgtaattaatgtctctattttgtgtgttaatatt 27638125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 29676850 - 29676787
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| |||||||||||||| |  | |||||||||||||||||| ||||||||||||    
T  29676850 tttttcatatttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgtgttaatatt 29676787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 30476036 - 30476099
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  30476036 tttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 30476099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 34055973 - 34055910
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| ||||||||| || | ||||||| ||||| |||||||||||||||||    
T  34055973 tttttcacatttcttaaaaaaaattgtcaatgtaattaatatgtctgttttgtgtgttaatatt 34055910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 46435841 - 46435778
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  46435841 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 46435778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 12077857 - 12077791
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  12077857 gcatttttcaaatttcttaagaaaagttgtcagtgtaattaatgtgtctcttttgtgtgttaatatt 12077791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 26517329 - 26517263
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| |||| |  | ||||||||||||| |||| ||||||||||||    
T  26517329 gcatttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttctgtgttaatatt 26517263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 51263075 - 51263140
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| |||| |||||||||||  | ||||||||||||| |||| ||||||| ||||    
T  51263075 catttttcacatttcttaaaaaaaattgttagtgtaattaatgtgtctgttttatgtgttagtatt 51263140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 42891413 - 42891477
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| ||||||    ||||||| ||||| |||||||||||||||||    
T  42891413 atttttcacatttcttaagaaaagttgttagtataattaatttgtctgttttgtgtgttaatatt 42891477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 11344553 - 11344612
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||||||||||| ||||||||| || ||   | |||||||||||||||||||||||||||    
T  11344553 tttttcacatttcttaagaaaagttattggtgtaattaatgtgtctattttgtgtgttaa 11344612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 23157093 - 23157152
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    ||||||||| |||||||||||||| |  | ||||||||||||| ||||||| ||||||||    
T  23157093 ttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgagttaatat 23157152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 29645353 - 29645416
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||||  ||||||  | ||||||||| ||| |||| ||||||||||||    
T  29645353 tttttcacatttattaagaaatgttgttagtgtaattaatgtatctgttttatgtgttaatatt 29645416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 31531536 - 31531473
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| ||||||||||| |||||    
T  31531536 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttgatatt 31531473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 33287861 - 33287924
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||  ||  | ||||||| |||||||||||||||||||||||    
T  33287861 tttttcacatttcttaagaaaagtttgtagtgtaattaatttgtctattttgtgtgttaatatt 33287924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 41727349 - 41727286
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||| |||| |  | ||||||||||||| |||||||||||||||||    
T  41727349 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 41727286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 46048517 - 46048580
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||| ||||||||    
T  46048517 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtattaatatt 46048580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 48213620 - 48213683
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| ||||||||| || ||||   ||||||||||| |||||||||||||||||||    
T  48213620 tttttcatattttttaagaaaagttattaataaaattaatgtgtttattttgtgtgttaatatt 48213683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 53717637 - 53717578
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    ||||| |||||| |||||||| ||||| || | ||||||||||||| |||||||||||||    
T  53717637 ttttttacatttcttaagaaatattgtcaatgtaattaatgtgtctgttttgtgtgttaa 53717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 26043012 - 26043074
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    ||||||| |||||| |||||||||||||| |  | ||||||| ||||| ||||||||||||||    
T  26043012 cattttttacatttcttaagaaaaattgtcagtgtaattaatatgtctgttttgtgtgttaat 26043074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 26121324 - 26121390
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||||| ||||||||| |||| |  | ||||||||||| | |||||||||||||||||    
T  26121324 gcattttttacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatatt 26121390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 308
Target Start/End: Original strand, 29611862 - 29611892
Alignment:
Q  278 aattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||||||||||||||    
T  29611862 aattaatgtgtctattttgtgtgttaatatt 29611892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 41825247 - 41825185
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| || ||||||||| |||| |  | |||||||||||||||||| ||||||||||||    
T  41825247 ttttcacacttcttaagaaaagttgtcagtgtaattaatgtgtctattttatgtgttaatatt 41825185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 21932955 - 21932984
Alignment:
Q  279 attaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||||||||||||||||||    
T  21932955 attaatgtgtctattttgtgtgttaatatt 21932984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 28243776 - 28243816
Alignment:
Q  267 attgttaacgcaattaatgtgtctattttgtgtgttaatat 307  Q
    |||||||| | ||||||||||| ||||||||||||||||||    
T  28243776 attgttaaggtaattaatgtgtttattttgtgtgttaatat 28243816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 28477411 - 28477443
Alignment:
Q  276 gcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| |||||||||||||||||    
T  28477411 gcaattaatgtgtctgttttgtgtgttaatatt 28477443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 48309443 - 48309502
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| ||| ||||||||| ||||||  ||||||| |||||||||||||| ||||||||||    
T  48309443 ttcacgtttcttaagaaaagttgttagtgcaatta-tgtgtctattttgtatgttaatatt 48309502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 12514697 - 12514632
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12514697 catttttcacatattttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatatt 12514632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 31946022 - 31945959
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  31946022 tttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatatt 31945959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 3888051 - 3887989
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| ||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  3888051 ttttcacatttcttaagaaaagttgttattgcagttaatgtgtctattttgtgtgttaatatt 3887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3729385 - 3729448
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| |||||||||||||||   | |||||||||||||||||||||||||||||||    
T  3729385 ttttttacatttcttaagaaaaattgttggtgtaattaatgtgtctattttgtgtgttaatatt 3729448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 5895727 - 5895790
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| | ||||||||||||| |||||||| ||||||||    
T  5895727 tttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctgttttgtgtattaatatt 5895790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 10669384 - 10669321
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| || | |||||||||||  |||||||||||||||||||||||||||||||||    
T  10669384 ttttttacatttttttaaaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatatt 10669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 28238422 - 28238361
Alignment:
Q  247 tttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| |||||||||||    |||||||||||||||||||||||||||||||    
T  28238422 tttcacatttcttaataaaaattgttagtataattaatgtgtctattttgtgtgttaatatt 28238361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 33607369 - 33607414
Alignment:
Q  263 aaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  33607369 aaaaattgttaatgcaattaatgtgtctatttagtgtgttaatatt 33607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 15981789 - 15981853
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| |||||   | ||||||||||||| |||||||||||||||||    
T  15981789 atttttcacatttcttaagaaaagttgttggtgtaattaatgtgtctgttttgtgtgttaatatt 15981853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 16327118 - 16327182
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| |||| ||   ||||||||||||| |||||||||||||||||    
T  16327118 atttttcacatttcttaagaaaagttgtcaatataattaatgtgtctgttttgtgtgttaatatt 16327182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4250768 - 4250705
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| |||||||||||||| |  | ||||||||||||| |||||||||||||||||    
T  4250768 ttttttacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 4250705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 19838927 - 19838990
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  19838927 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 19838990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 8644908 - 8644843
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||| |||| |||| |||||| | |||||||| | |||||||||| ||||||||||    
T  8644908 catttttcacatttcttaaaaaaagttgttagcacaattaatatatctattttgtatgttaatatt 8644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 31780119 - 31780183
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||| |||| |||| ||| ||| |||||||||||||||||||||| |||| |||||    
T  31780119 atttttcatatttcttaataaaagttgataatgcaattaatgtgtctattttgtatgttgatatt 31780183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 1763809 - 1763872
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  1763809 tttttcatatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 1763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 11302851 - 11302914
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||    ||||||||||||| |||| ||||||||||||    
T  11302851 tttttcacatttcttaagaaaagttgttagtataattaatgtgtctgttttttgtgttaatatt 11302914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 22410953 - 22410890
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | ||||||||||||| |||| | ||||||||||    
T  22410953 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttttatgttaatatt 22410890  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 16350516 - 16350580
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| |||| |||| |||| |  | |||||||| |||| |||||||||||||||||    
T  16350516 atttttcacattttttaataaaagttgtcagtgtaattaatgagtctgttttgtgtgttaatatt 16350580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 43709911 - 43709978
Alignment:
Q  242 gcatttttcacatttattaag-aaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||| |||||||||||  |||||||||| ||||||||||||||||||||||    
T  43709911 gcatttttcacatttcttaagcaaaaattgttagtgcaattaatgcgtctattttgtgtgttaatatt 43709978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 13477145 - 13477079
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||||||||||  ||||||||| ||| |||||| ||||||||||||    
T  13477145 gcatttttcacattttttaagaaaaattgttagtgcaattaatatgtttattttatgtgttaatatt 13477079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 21012846 - 21012912
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| ||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  21012846 gcatttttcaaatttcttaagaaaagttgttagtgcaattaatgtgtttattttgtgtgttaatatt 21012912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 247656 - 247719
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||| ||| ||||||  | |||||||||||||||||||||||||||||||    
T  247656 tttttcacattttttaaggaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 247719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4398632 - 4398570
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||||    
T  4398632 tttttcacattt-ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 4398570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 8384081 - 8384018
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| ||||||||||| ||||  ||||||||||||| |||||||||||||||||||    
T  8384081 tttttcatatttcttaagaaaaatagttagtgcaattaatgtgtttattttgtgtgttaatatt 8384018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 20361979 - 20362042
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||||||||||  | | |||||||||||||||| ||||||||||||    
T  20361979 tttttcacatttcttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaatatt 20362042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 27297573 - 27297636
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||| |||||  | ||||||||||||| |||||||||||||||||    
T  27297573 tttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctgttttgtgtgttaatatt 27297636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 32677471 - 32677534
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||| |||||||||||||||||  ||||||||||||||||||| || |||||||||    
T  32677471 ttttccacatttcttaagaaaaattgttaatacaattaatgtgtctattttatgggttaatatt 32677534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 44424588 - 44424654
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| ||||||  | ||||||||||||| |||||| ||||||||||    
T  44424588 gcatttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttgtatgttaatatt 44424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 45214718 - 45214784
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  45214718 gcatttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 45214784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 2131751 - 2131816
Alignment:
Q  243 catttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||||| ||||||||| ||||||  ||||||||  |||||||||||||||||||||||    
T  2131751 cattttttacatttcttaagaaaagttgttagtgcaattaacatgtctattttgtgtgttaatatt 2131816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 44274777 - 44274712
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatattg 309  Q
    ||||||||||||| ||||||||| |||| || | ||||||||||||| |||| |||||||||||||    
T  44274777 atttttcacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttatgtgttaatattg 44274712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 22590485 - 22590437
Alignment:
Q  257 attaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||    
T  22590485 attaagaaaaattgttaatgtaattaatgtgtctactttgtgtgttaat 22590437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 14527620 - 14527682
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||  |||| |||||||||||  | |||||||||||||||||||||||||||||||    
T  14527620 tttttcacattatttaa-aaaaattgttagggtaattaatgtgtctattttgtgtgttaatatt 14527682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 17251070 - 17251007
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||    ||||||||||||| |||||||||||||||||    
T  17251070 tttttcacattttttaagaaaagttgttagtataattaatgtgtctgttttgtgtgttaatatt 17251007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 17663620 - 17663683
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||| ||||||| ||||||||||||    
T  17663620 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgcctattttatgtgttaatatt 17663683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 20426933 - 20427000
Alignment:
Q  242 gcatttttcacatttatt-aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||||| || ||||||||||||||  | |||||||||||||||||||||||||| ||||    
T  20426933 gcatttttgacatttttttaagaaaaattgttagtgaaattaatgtgtctattttgtgtgttattatt 20427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 24774861 - 24774924
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| || |||  | ||||||||| |||||||||||||||||||||    
T  24774861 tttttcacattttttaagaaaatttattagtgtaattaatgtatctattttgtgtgttaatatt 24774924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 37355032 - 37355095
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||||   | ||||||||||||| |||||||||||||||||    
T  37355032 tttttcacatttcttaagaaaagttgtttgtgtaattaatgtgtctcttttgtgtgttaatatt 37355095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 40346190 - 40346127
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||||   |||||||||||||  ||||||||||||||||||    
T  40346190 tttttcacattttttaagaaaagttgtttgtgcaattaatgtgttcattttgtgtgttaatatt 40346127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 6275679 - 6275617
Alignment:
Q  243 catttttcacatttattaagaaaaa-ttgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||||||| ||||| |||| ||||| ||||||  |||||||||||||||||||||||||||||    
T  6275679 catttttcccatttcttaaaaaaaaattgttagtgcaattaatgtgtctattttgtgtgttaa 6275617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 9718284 - 9718218
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| ||||||||  |||| |  | ||||||||||||| |||||||||||||||||    
T  9718284 gcatttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 9718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 34042164 - 34042102
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||| || | |||||||||||   ||||||||||||||||||||| ||||||||||    
T  34042164 ttttcacatttttttaaaaaaattgttagttcaattaatgtgtctattttgtatgttaatatt 34042102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 45150842 - 45150782
Alignment:
Q  248 ttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||| ||||||||| |||||   |||||||||||||  ||||||||||||||||||    
T  45150842 ttcacatttcttaagaaaagttgtttgtgcaattaatgtgttcattttgtgtgttaatatt 45150782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3645319 - 3645382
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||    | |||||||||||||||||||| ||||||||    
T  3645319 tttttcacatttcttaagaaaagttgttagtttacttaatgtgtctattttgtgtattaatatt 3645382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 15851527 - 15851590
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |  | ||||||||||||| |||| ||||||||||||    
T  15851527 tttttcacatttcttaagaaaagttgtgagtgtaattaatgtgtctgttttttgtgttaatatt 15851590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 26512067 - 26512130
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||||||||||    ||||||||||| |||||| ||||||||||||    
T  26512067 tttttcacatttcttaaaaaaaattgttagtataattaatgtgtttattttatgtgttaatatt 26512130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 41865712 - 41865771
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||||||||||| ||||||||| |||||     |||||||||||||||||||||||||||    
T  41865712 tttttcacatttcttaagaaaagttgttggtctaattaatgtgtctattttgtgtgttaa 41865771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 44421445 - 44421508
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||||| |  | ||||||||| ||| |||||| ||||||||||    
T  44421445 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtatctgttttgtttgttaatatt 44421508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3237717 - 3237782
Alignment:
Q  245 tttttcacatttattaagaaaaat--tgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |  | |||| | ||||||||||||| |||||||||||||||||    
T  3237717 tttttcacattttttaagaaaagtgttattaatgtaattaatgtgtctgttttgtgtgttaatatt 3237782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 11071677 - 11071727
Alignment:
Q  258 ttaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||| ||||||  |||||||||||||||| ||| ||||||||||||    
T  11071677 ttaagaaaagttgttagtgcaattaatgtgtctaatttatgtgttaatatt 11071727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 41665706 - 41665767
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaata 306  Q
    |||||||||||| ||||||||  |||| |  | ||||||||||||| |||||||||||||||    
T  41665706 tttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaata 41665767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 14420688 - 14420736
Alignment:
Q  260 aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||||||  | ||||||||||||| |||||||||||||||||    
T  14420688 aagaaaagttgttagtgtaattaatgtgtctgttttgtgtgttaatatt 14420736  T

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Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 42250985 - 42250925
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    |||||||||||| ||| ||||| ||| ||  | |||||||||||||||||||||| |||||    
T  42250985 tttttcacatttcttatgaaaagttggtagtgtaattaatgtgtctattttgtgttttaat 42250925  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 49129 - 49195
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||| |||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||||||    
T  49129 gcattttttacatttcttaagaaaaattgttaatgtaattaatatgtctactttgtgtgttaatatt 49195  T

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Target: scaffold1091 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 2022 - 1959
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||| || ||||||  | |||||||||||||||||||||||||||||||    
T  2022 tttttcacatttcttaagataagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 1959  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 3559135 - 3559072
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||||||     |||||||||||||||||||||||||||||||    
T  3559135 tttttcacatttcttaagaaaaattgttggtataattaatgtgtctattttgtgtgttaatatt 3559072  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 18729584 - 18729647
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||||||||||| ||   | |||||||||||||||||||||||||||||||    
T  18729584 tttttcacatttcttaagaaaaattatttgtgtaattaatgtgtctattttgtgtgttaatatt 18729647  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 21912116 - 21912179
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||||||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  21912116 tttttcacatttattaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 21912179  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 29866185 - 29866248
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  ||||||||| ||||| |||||||||||||||||    
T  29866185 tttttcacatttcttaagaaaagttgttagtgcaattaatatgtcttttttgtgtgttaatatt 29866248  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 32067824 - 32067887
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  32067824 ttttttacatttcttaagaaaaatagttagtgcaattcatgtgtctattttgtgtgttaatatt 32067887  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 43060618 - 43060555
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||| ||||||  | |||||||||||||||||||||||||||||||    
T  43060618 tttttcacattttttaataaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 43060555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 20946080 - 20946146
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| ||||||||  ||||||  |||||||| ||||||||||||||||||||||||    
T  20946080 gcatttttcatatttcttaagaaacgttgttagtgcaattaacgtgtctattttgtgtgttaatatt 20946146  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 41521185 - 41521247
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| |||||| ||||||||||||||||  | ||||||| |||||||||||||||||||||||    
T  41521185 tttttacattttttaagaaaaattgttagtgaaattaatatgtctattttgtgtgttaatatt 41521247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 10656588 - 10656645
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaa 304  Q
    |||||||||||| ||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  10656588 tttttcacatttcttaagaaaaattgttaatgcaattaatgtg--tattttatgtgttaa 10656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 600769 - 600824
Alignment:
Q  253 atttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||| ||||||||| ||||||  |||||||||||||||||| ||||||||||||||    
T  600769 atttcttaagaaaacttgttagtgcaattaatgtgtctattatgtgtgttaatatt 600824  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 11980712 - 11980775
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| |||| |||| |||| ||||||  | |||||||||||||||||||||||||||||||    
T  11980712 tttttcatattttttaataaaagttgttagtgtaattaatgtgtctattttgtgtgttaatatt 11980775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 14044606 - 14044543
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||| ||| ||||| |||||||||| ||| ||||||||    
T  14044606 tttttcacatttcttaagaaaagttgttaatgcagttaatatgtctattttatgtattaatatt 14044543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 27642498 - 27642561
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  27642498 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 27642561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 30348185 - 30348122
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| | ||||||| |||||||   | |||||||||||||||||||||||||||||    
T  30348185 tttttcacatttctgaagaaaagttgttaatttacttaatgtgtctattttgtgtgttaatatt 30348122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 39690594 - 39690531
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | | |||||||||||||||| ||||||||||||    
T  39690594 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatatt 39690531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 7510601 - 7510665
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| ||||||||| || |||  | ||||||||||| | |||||||||||||||||    
T  7510601 atttttcacattttttaagaaaagttattagtgtaattaatgtgtatgttttgtgtgttaatatt 7510665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 27798151 - 27798215
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||| |||||||| ||||| |  | ||||||| ||||| |||||||||||||||||    
T  27798151 atttttcacattttttaagaaatattgtcagtgtaattaatttgtctgttttgtgtgttaatatt 27798215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 31642577 - 31642514
Alignment:
Q  244 atttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||||||||| ||||||||| |  | ||||||||||||| |||||||||||||||||    
T  31642577 attttacacatttattaaaaaaaattgtcagtgtaattaatgtgtct-ttttgtgtgttaatatt 31642514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 38972270 - 38972185
Alignment:
Q  208 tactccatccgtctctatatctaaacat-ttttaggcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattt 294  Q
    |||||| |||||| |||||| ||||||  |||||  |||||||||||||| ||||||||| ||||||  | |||||||||||||||||    
T  38972270 tactccctccgtccctatatgtaaacacatttta--catttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattt 38972185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 4745119 - 4745186
Alignment:
Q  242 gcatttttcacatttatt-aagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||||||||||| || ||||||| | ||||  ||||||||||||| ||||||||| |||||||||    
T  4745119 gcatttttcacatttttttaagaaaagtagttagtgcaattaatgtgtttattttgtgggttaatatt 4745186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 16969370 - 16969433
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| |||| |||||||||||    |||||||||||||| ||||| ||||||||||    
T  16969370 tttttcacattttttaacaaaaattgttagtataattaatgtgtctaatttgtttgttaatatt 16969433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 27587834 - 27587897
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| |||| |    ||||||||||||| |||||||||||||||||    
T  27587834 tttttcacatttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaatatt 27587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 36177288 - 36177351
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||| |||||| ||||||||| || | |  | |||||||||||||||||||||||||||||||    
T  36177288 ttttttacatttcttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaatatt 36177351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 15898570 - 15898508
Alignment:
Q  246 ttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    ||||||| ||| ||||||||| |||| |  | ||||||||||||| |||||||||||||||||    
T  15898570 ttttcacttttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 15898508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 99929 - 99863
Alignment:
Q  242 gcatttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| ||||||||| ||||||  |||| | ||||||||||||||||||||||||||    
T  99929 gcatttttcatatttgttaagaaaagttgttagtgcaacttatgtgtctattttgtgtgttaatatt 99863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 38584 - 38523
Alignment:
Q  247 tttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||| |||| |||||||||||    |||||||||||||||||||||||||||||||    
T  38584 tttcacatttcttaataaaaattgttagtataattaatgtgtctattttgtgtgttaatatt 38523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 214614 - 214677
Alignment:
Q  245 tttttcacatttattaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaatatt 308  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||| ||| ||||||||||||    
T  214614 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatatt 214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 3095 - 3143
Alignment:
Q  257 attaagaaaaattgttaacgcaattaatgtgtctattttgtgtgttaat 305  Q
    ||||||||||||||||||   |||||||||||||| ||||| |||||||    
T  3095 attaagaaaaattgttaatataattaatgtgtctactttgtctgttaat 3143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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