View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12350_high_6 (Length: 299)
Name: NF12350_high_6
Description: NF12350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12350_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 45477507 - 45477797
Alignment:
| Q |
1 |
ccatcgtcggaaacctacctcacatgggcccagtaccacaccatgccctagcagtcttggcccttaaacacggtcctctcatgcatcttcgtttgggcta |
100 |
Q |
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| T |
45477507 |
ccatcgtcggaaacctacctcacatgggcccagtaccacaccatgccctagcagtcttggcccttaaacacggtcctctcatgcatcttcgtttgggcta |
45477606 |
T |
|
| Q |
101 |
cgtcgacgtgattgtcgccgcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45477607 |
cgtcgacgtgattgtcgcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaa |
45477706 |
T |
|
| Q |
201 |
tacttagcatataattatcaagatcttgtttttgctccttatggaccacggtggcgtttgttaaggaaaatatcgtacgttcacaggttct |
291 |
Q |
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| T |
45477707 |
tacttagcatataattatcaagatcttgtttttgctccttatggaccacggtggcgtttgttaaggaaaatatcgtacgttcacatgttct |
45477797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 7624009 - 7623903
Alignment:
| Q |
138 |
gaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataattatcaagatcttgtttttgctc |
237 |
Q |
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|||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| |||||||||||||| ||||| | |
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| T |
7624009 |
gaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgccc |
7623910 |
T |
|
| Q |
238 |
cttatgg |
244 |
Q |
| |
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||||||| |
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| T |
7623909 |
cttatgg |
7623903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 7659676 - 7659794
Alignment:
| Q |
138 |
gaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataattatcaagatcttgtttttgctc |
237 |
Q |
| |
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|||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| |||||||| ||||| ||||| | |
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| T |
7659676 |
gaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagaccttgtgtttgcac |
7659775 |
T |
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| Q |
238 |
cttatggaccacggtggcg |
256 |
Q |
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||||||| || |||||||| |
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| T |
7659776 |
cttatggtccgcggtggcg |
7659794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 7675285 - 7675421
Alignment:
| Q |
120 |
gcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataattatc |
219 |
Q |
| |
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||||| ||||| || || |||||||||||||| || |||||| | || ||| |||||||||| | || |||| || || ||| ||| |||||||||| |
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| T |
7675285 |
gcttcggcctccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggccacccaatgccggagctaagtacataggttataattatc |
7675384 |
T |
|
| Q |
220 |
aagatcttgtttttgctccttatggaccacggtggcg |
256 |
Q |
| |
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|||| ||||| |||| ||||||||| ||| ||||||| |
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| T |
7675385 |
aagaccttgtgtttggtccttatggtccaaggtggcg |
7675421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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