View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12350_low_2 (Length: 469)
Name: NF12350_low_2
Description: NF12350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12350_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 28783029 - 28783278
Alignment:
| Q |
19 |
gtttcttgaatggaggaagaacaactggtggtttgtatattggaacaacgggtggctttggaattactactggaggcttatatattggaacaggtggtag |
118 |
Q |
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| T |
28783029 |
gtttcttgaatggaggaagaataactggtggtttgtatattggaacaacgggtggctttggaattactactggaggcttatatattggaacaggtggtag |
28783128 |
T |
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| Q |
119 |
aactgggtgctcaatctttggtggacatggtttcttgatcgggactggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggt |
218 |
Q |
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| T |
28783129 |
aactgggtgctcaatctttggtggacatggtttcttgatcgggactggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggt |
28783228 |
T |
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| Q |
219 |
aaaactggatgttcaacctttggtggtggacatggtttcttgactggaac |
268 |
Q |
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| T |
28783229 |
aaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac |
28783278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 89 - 426
Target Start/End: Original strand, 28783201 - 28783541
Alignment:
| Q |
89 |
tggaggcttatatattggaacaggtggtagaactgggtgctcaatctttggt---ggacatggtttcttgatcgggactggtggtggaagtgcctttgga |
185 |
Q |
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| T |
28783201 |
tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtggctttgga |
28783300 |
T |
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| Q |
186 |
accggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtt |
285 |
Q |
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| T |
28783301 |
actggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtt |
28783400 |
T |
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| Q |
286 |
tatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcataaacaggtgtaggaggagggataggttt |
385 |
Q |
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| T |
28783401 |
tatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggttt |
28783500 |
T |
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| Q |
386 |
ttcatagataggcacaggtggagggcaaggtttcttgtaga |
426 |
Q |
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| T |
28783501 |
atggtaaacaggcacaggcggaggaagaggtttctcgtaga |
28783541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 28783487 - 28783663
Alignment:
| Q |
273 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcataaacaggtgtaggag |
372 |
Q |
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| T |
28783487 |
ggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacaggtgtaggag |
28783586 |
T |
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| Q |
373 |
gagggataggtttttcatagataggcacaggtggagggcaaggtttcttgtagataggaatatgaggaaagggaggt |
449 |
Q |
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| T |
28783587 |
gagggataggtttttcatagataggcacaggtggaggacaaggtttcttgtagataggaatatgaggaaagggaggt |
28783663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 28783448 - 28783572
Alignment:
| Q |
267 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcataaacaggtg |
366 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtg |
28783547 |
T |
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| Q |
367 |
taggaggagggataggtttttcata |
391 |
Q |
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| T |
28783548 |
taggtggaggaagaggtttctcata |
28783572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
267 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
331 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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