View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12350_low_7 (Length: 272)

Name: NF12350_low_7
Description: NF12350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12350_low_7
NF12350_low_7
[»] chr6 (3 HSPs)
chr6 (19-272)||(7926606-7926846)
chr6 (225-271)||(606725-606771)
chr6 (211-272)||(180320-180381)
[»] chr8 (13 HSPs)
chr8 (208-272)||(8251212-8251277)
chr8 (208-263)||(16890387-16890442)
chr8 (225-272)||(31658847-31658894)
chr8 (230-272)||(40694231-40694273)
chr8 (230-272)||(40696663-40696705)
chr8 (231-267)||(1445353-1445389)
chr8 (208-272)||(2520238-2520302)
chr8 (225-272)||(36054810-36054857)
chr8 (226-272)||(30112532-30112578)
chr8 (231-272)||(30654269-30654310)
chr8 (229-270)||(43836932-43836973)
chr8 (205-261)||(2207746-2207801)
chr8 (224-260)||(35431578-35431614)
[»] chr3 (7 HSPs)
chr3 (211-272)||(35455288-35455349)
chr3 (188-265)||(43320245-43320322)
chr3 (211-272)||(32211896-32211957)
chr3 (233-272)||(25295159-25295198)
chr3 (225-272)||(45261358-45261405)
chr3 (211-272)||(8825465-8825524)
chr3 (231-272)||(18085656-18085696)
[»] scaffold0024 (1 HSPs)
scaffold0024 (225-272)||(154334-154381)
[»] scaffold0836 (1 HSPs)
scaffold0836 (215-272)||(3006-3063)
[»] chr2 (10 HSPs)
chr2 (231-272)||(40442718-40442759)
chr2 (211-262)||(3711954-3712005)
chr2 (233-272)||(40503877-40503916)
chr2 (235-272)||(3268802-3268839)
chr2 (235-272)||(3269361-3269398)
chr2 (235-272)||(3269920-3269957)
chr2 (208-272)||(2761521-2761584)
chr2 (215-272)||(38214097-38214154)
chr2 (224-272)||(39063701-39063749)
chr2 (232-272)||(44883270-44883310)
[»] scaffold0088 (1 HSPs)
scaffold0088 (225-272)||(51267-51314)
[»] chr7 (9 HSPs)
chr7 (225-272)||(20949067-20949114)
chr7 (236-272)||(46341502-46341538)
chr7 (229-272)||(2195803-2195846)
chr7 (211-258)||(6549222-6549269)
chr7 (232-266)||(37048576-37048610)
chr7 (225-262)||(17205123-17205160)
chr7 (211-272)||(41508080-41508141)
chr7 (236-272)||(12506713-12506749)
chr7 (233-265)||(26195874-26195906)
[»] chr5 (3 HSPs)
chr5 (211-272)||(6688767-6688828)
chr5 (233-272)||(3629316-3629355)
chr5 (234-272)||(3257316-3257354)
[»] chr4 (6 HSPs)
chr4 (231-272)||(16572252-16572293)
chr4 (225-272)||(18838746-18838793)
chr4 (201-272)||(44884457-44884530)
chr4 (225-265)||(27032132-27032172)
chr4 (215-263)||(54863908-54863956)
chr4 (236-272)||(56093596-56093632)
[»] chr1 (11 HSPs)
chr1 (231-272)||(46443702-46443743)
chr1 (231-266)||(31003693-31003728)
chr1 (211-262)||(36437316-36437367)
chr1 (231-272)||(9851919-9851960)
chr1 (231-272)||(11435553-11435594)
chr1 (211-272)||(17971469-17971530)
chr1 (235-272)||(17988390-17988427)
chr1 (211-260)||(27442490-27442539)
chr1 (235-272)||(39150287-39150324)
chr1 (224-260)||(31181171-31181207)
chr1 (208-272)||(42745521-42745585)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 7926606 - 7926846
Alignment:
Q  19 cctgcaaaggccaccacagttcccacgtgaacacacatgcaagtaataatgcatcaaaatcaaaacagaaatttttgggctccacacttacaaaataatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                      
T  7926606 cctgcaaaggccaccacagttcccacgtgaacacacatgcaagtaataatgcatcaaaatcaaaacagaaaattttgggctc------------------ 7926687  T
Q  119 cacatttccctatttttcaaggatagcaacagag---tttgaatccgaaatctccaaattaaaatttactcctccgatcttatgcataaaagaaatttc- 214  Q
    |||||||||||||| ||||||||| | |||||||   || |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||     
T  7926688 cacatttccctattattcaaggatggtaacagagttcttcgaatccgaaatctccaaattaaaacttactcctctggtcttatgtataaaagaaatttca 7926787  T
Q  215 -aaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
     |||||| || |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  7926788 aaaaaaaaatgttggtcatatttataagaaaatatcacaacttttaaagtgtaattatt 7926846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 606771 - 606725
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattat 271  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  606771 ttggtcctatttataagaaaatgtcacaacttttaaggtgtacttat 606725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 180320 - 180381
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||  | ||||| ||||||||||||||||||||||| ||||||| |||| |||||    
T  180320 tttcaaaaaatttgttggtcctatttataagaaaatatcacaatttttaagatgtagttatt 180381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 8251212 - 8251277
Alignment:
Q  208 aaatttcaaaaaagatatt-ggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  8251212 aaattttaaaaaaaatatttggtcctatttataagaaaatatcacaacttttaaggtgtaattatt 8251277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 16890442 - 16890387
Alignment:
Q  208 aaatttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggt 263  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  16890442 aaatttcaaaaatgatattggtcctatttatatgaaaatatcacaacttttaaggt 16890387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 31658847 - 31658894
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  31658847 ttggttctatttataagaaaatatcacaacttttaagatgtagttatt 31658894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 40694231 - 40694273
Alignment:
Q  230 tctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40694231 tctatttataagaaaatatcacaactttttaggtgtaattatt 40694273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 40696705 - 40696663
Alignment:
Q  230 tctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  40696705 tctatttataagaaaatatcacaactttttagatgtaattatt 40696663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 1445353 - 1445389
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaa 267  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1445353 ctatttataagaaaatgtcacaacttttaaggtgtaa 1445389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 2520302 - 2520238
Alignment:
Q  208 aaatttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||| |||||| | |||||||| |||||||||||||| |||||| ||||||| |||| |||||    
T  2520302 aaatttaaaaaaaaaaattggttcaatttataagaaaatgtcacaaattttaagatgtagttatt 2520238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 36054810 - 36054857
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||| |||||||||||||||| |||||||||||||||| || |||||    
T  36054810 ttggtcctatttataagaaaatgtcacaacttttaaggtatatttatt 36054857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 30112578 - 30112532
Alignment:
Q  226 tggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||| |||||||||||||||| |||||| |||||||||||| |||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaaggtgtagttatt 30112532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 30654310 - 30654269
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||| ||||||||||||||||||||||||| ||||| |||||    
T  30654310 ctatatataagaaaatatcacaacttttaaagtgtagttatt 30654269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 43836932 - 43836973
Alignment:
Q  229 ttctatttataagaaaatatcacaacttttaaggtgtaatta 270  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  43836932 ttctaattataagaaaatattacaatttttaaggtgtaatta 43836973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2207746 - 2207801
Alignment:
Q  205 aagaaatttcaaaaaagatattggttctatttataagaaaatatcacaacttttaag 261  Q
    ||||||||| |||||| | |||||| ||||||||| ||||||||||||| |||||||    
T  2207746 aagaaattttaaaaaaaaaattggtcctatttata-gaaaatatcacaatttttaag 2207801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 35431578 - 35431614
Alignment:
Q  224 attggttctatttataagaaaatatcacaacttttaa 260  Q
    |||||| |||||||||||||||| |||||||||||||    
T  35431578 attggtcctatttataagaaaatgtcacaacttttaa 35431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 35455288 - 35455349
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||| | ||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  35455288 tttcaaaaaaaaaattggtcttatttataagaaaatgtcacaacttttaaggtgtaattatt 35455349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 43320322 - 43320245
Alignment:
Q  188 tccgatcttatgcataaaagaaatttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgt 265  Q
    |||||||||||| |||| | || |||||||||| |  ||||  |||||||||||||||| ||||||||||||||||||    
T  43320322 tccgatcttatgtataataaaattttcaaaaaaaagtttggacctatttataagaaaatgtcacaacttttaaggtgt 43320245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 32211957 - 32211896
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||  | |||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  32211957 tttcaaaaaaattgttggtcttatttataagaaaatttcacaacttttaaggtgtagttatt 32211896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 25295198 - 25295159
Alignment:
Q  233 atttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattatt 25295159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 45261358 - 45261405
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||| |||||||||||||||| |||||||||||||| |||| |||||    
T  45261358 ttggtcctatttataagaaaatgtcacaacttttaagctgtagttatt 45261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 8825524 - 8825465
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||| | |||||| |||||||||||||||| |||||| |||||||||||| |||||    
T  8825524 tttcaaaaaaaa-attggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttatt 8825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 18085696 - 18085656
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  18085696 ctatttataagaaaatatcacaa-ttttaaggtgtagttatt 18085656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 154334 - 154381
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  154334 ttggttctatttataagaaaatattacaacttttaaggtgtagttatt 154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 3006 - 3063
Alignment:
Q  215 aaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||| | ||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  3006 aaaaaagtttttggtcctatttataagaaaatgtcacaacttttaaggtgtagttatt 3063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 40442718 - 40442759
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  40442718 ctatttataagaaaatgtcacaacttttaaggtgtaattatt 40442759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 3712005 - 3711954
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaagg 262  Q
    |||||||||| |  |||||||||||||||||||||| |||||||||||||||    
T  3712005 tttcaaaaaaaaatttggttctatttataagaaaatgtcacaacttttaagg 3711954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 40503877 - 40503916
Alignment:
Q  233 atttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  40503877 atttataagaaaatgtcacaacttttaaggtgtaattatt 40503916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 3268802 - 3268839
Alignment:
Q  235 ttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3268802 ttataagaaaatatcacaacttttaaggtgtagttatt 3268839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 3269361 - 3269398
Alignment:
Q  235 ttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3269361 ttataagaaaatatcacaacttttaaggtgtagttatt 3269398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 3269920 - 3269957
Alignment:
Q  235 ttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3269920 ttataagaaaatatcacaacttttaaggtgtagttatt 3269957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 2761521 - 2761584
Alignment:
Q  208 aaatttcaaaaaagatattggttctatttataag--aaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||   |||||| ||||||||||   ||||||||||||||||||| |||||||||||    
T  2761521 aaatttcaaaaaa---attggtcctatttataaataaaaatatcacaacttttaaagtgtaattatt 2761584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 38214097 - 38214154
Alignment:
Q  215 aaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||| || ||||| | |||||||||||||  ||||||||||||||||||| |||||    
T  38214097 aaaaaaaattttggtccaatttataagaaaaattcacaacttttaaggtgtatttatt 38214154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 39063749 - 39063701
Alignment:
Q  224 attggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||| | |||||||||||||  ||||||||||||||||||| |||||    
T  39063749 attggtccaatttataagaaaaattcacaacttttaaggtgtatttatt 39063701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 44883310 - 44883270
Alignment:
Q  232 tatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||| ||||||||| || |||||    
T  44883310 tatttataagaaaatatcacaatttttaaggtatatttatt 44883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 51267 - 51314
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  51267 ttggttctatttataagtaaatgtcacaacttttaaggtgtatttatt 51314  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 20949067 - 20949114
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  20949067 ttggttctatttataagaaaatgtcataacttttaaggtgtagttatt 20949114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 46341502 - 46341538
Alignment:
Q  236 tataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttatt 46341538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 2195803 - 2195846
Alignment:
Q  229 ttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||    
T  2195803 ttctatatataagaaaatatcataacttttaaggtgtagttatt 2195846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 6549269 - 6549222
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaactttt 258  Q
    |||||||||| |  ||||| ||||||||||||||||||||||||||||    
T  6549269 tttcaaaaaaaaatttggtcctatttataagaaaatatcacaactttt 6549222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 37048576 - 37048610
Alignment:
Q  232 tatttataagaaaatatcacaacttttaaggtgta 266  Q
    ||||||||||||||||||||||||||||| |||||    
T  37048576 tatttataagaaaatatcacaacttttaaagtgta 37048610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 17205123 - 17205160
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaagg 262  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  17205123 ttggtcctatttataagaaaatgtcacaacttttaagg 17205160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 41508080 - 41508141
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||| |  ||||| |||  |||||||||||||||||| |||||||||||| |||||    
T  41508080 tttcaaaaaaaaatttggtcctaaatataagaaaatatcacaatttttaaggtgtagttatt 41508141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 12506713 - 12506749
Alignment:
Q  236 tataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  12506713 tataagaaaatattacaacttttaaggtgtagttatt 12506749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 26195874 - 26195906
Alignment:
Q  233 atttataagaaaatatcacaacttttaaggtgt 265  Q
    |||||||||||||| ||||||||||||||||||    
T  26195874 atttataagaaaatgtcacaacttttaaggtgt 26195906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 6688767 - 6688828
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||| ||  |||| |||  ||||||||||||||||||||||||||||||| |||||    
T  6688767 tttcaaaaaatattatggtcctaaatataagaaaatatcacaacttttaaggtgtagttatt 6688828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 3629355 - 3629316
Alignment:
Q  233 atttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  3629355 atttataagaaaatgtcacaacttttaaggtgtagttatt 3629316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 3257354 - 3257316
Alignment:
Q  234 tttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactatt 3257316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 16572252 - 16572293
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  16572252 ctatttataagaaaatgtcacaacttttaaggtgtagttatt 16572293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 18838746 - 18838793
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  18838746 ttggttctatttatgagaaaatgtcataacttttaaggtataattatt 18838793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 44884530 - 44884457
Alignment:
Q  201 ataaaagaaatttcaaaaaagatattggttctatttataagaaaatatcacaac--ttttaaggtgtaattatt 272  Q
    |||||| ||| |||||||||| | ||||| |||| ||||||||||| |||||||  |||||||||||| |||||    
T  44884530 ataaaataaaattcaaaaaagtttttggtcctatatataagaaaatgtcacaacttttttaaggtgtagttatt 44884457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 27032132 - 27032172
Alignment:
Q  225 ttggttctatttataagaaaatatcacaacttttaaggtgt 265  Q
    ||||||||||||||| ||||||||||||| | |||||||||    
T  27032132 ttggttctatttataggaaaatatcacaattcttaaggtgt 27032172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 54863908 - 54863956
Alignment:
Q  215 aaaaaagatattggttctatttataagaaaatatcacaacttttaaggt 263  Q
    |||||| | |||||| |||||||||||||||  ||||||||||||||||    
T  54863908 aaaaaaaaaattggtcctatttataagaaaaagtcacaacttttaaggt 54863956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 56093596 - 56093632
Alignment:
Q  236 tataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  56093596 tataaaaaaatatcataacttttaaggtgtaattatt 56093632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 46443702 - 46443743
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  46443702 ctatttataagaaaacgtcacaacttttaaggtgtaattatt 46443743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 31003728 - 31003693
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgta 266  Q
    |||||||||||||||| |||||||||||||||||||    
T  31003728 ctatttataagaaaatgtcacaacttttaaggtgta 31003693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 36437367 - 36437316
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaagg 262  Q
    ||||||||||  | ||||| |||||||||||||||| |||||||||||||||    
T  36437367 tttcaaaaaaagttttggtcctatttataagaaaatgtcacaacttttaagg 36437316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 9851960 - 9851919
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||| ||||||||||||| ||||| |||||    
T  9851960 ctatttataagaaaatgtcacaacttttaaagtgtagttatt 9851919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 11435553 - 11435594
Alignment:
Q  231 ctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||||||| ||||||||| |||||| ||||||||    
T  11435553 ctatttataagaaaatgtcacaacttataaggtataattatt 11435594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 17971530 - 17971469
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||  | ||||| |||||||||||||||  |||||||||||||||| || |||||    
T  17971530 tttcaaaaaacgttttggtcctatttataagaaaaagtcacaacttttaaggtatatttatt 17971469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 17988427 - 17988390
Alignment:
Q  235 ttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  17988427 ttataagaaaatgtcacaacttttaaggtgtagttatt 17988390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 27442539 - 27442490
Alignment:
Q  211 tttcaaaaaagatattggttctatttataagaaaatatcacaacttttaa 260  Q
    |||||||||| |  ||||| ||||||||||||||| ||||||||||||||    
T  27442539 tttcaaaaaaaaacttggtcctatttataagaaaaaatcacaacttttaa 27442490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 39150324 - 39150287
Alignment:
Q  235 ttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttatt 39150287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 31181207 - 31181171
Alignment:
Q  224 attggttctatttataagaaaatatcacaacttttaa 260  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  31181207 attggttttatttataagaaaatgtcacaacttttaa 31181171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 42745521 - 42745585
Alignment:
Q  208 aaatttcaaaaaagatattggttctatttataagaaaatatcacaacttttaaggtgtaattatt 272  Q
    ||||||||||||| |  ||||| |||||||||||||||| |||||| |||| | || ||||||||    
T  42745521 aaatttcaaaaaaaaatttggtcctatttataagaaaatgtcacaatttttgaagtataattatt 42745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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