View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12350_low_8 (Length: 253)

Name: NF12350_low_8
Description: NF12350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12350_low_8
NF12350_low_8
[»] chr6 (9 HSPs)
chr6 (15-253)||(7926862-7927101)
chr6 (125-252)||(34837113-34837240)
chr6 (20-84)||(7929036-7929100)
chr6 (124-253)||(180397-180526)
chr6 (154-211)||(12143711-12143768)
chr6 (155-213)||(31116418-31116476)
chr6 (170-235)||(12453713-12453778)
chr6 (170-249)||(6657939-6658018)
chr6 (155-213)||(31117343-31117401)
[»] chr7 (12 HSPs)
chr7 (124-252)||(41508158-41508286)
chr7 (154-214)||(20949168-20949228)
chr7 (124-213)||(45072480-45072569)
chr7 (143-215)||(12485371-12485443)
chr7 (143-215)||(12506803-12506875)
chr7 (143-250)||(7307501-7307608)
chr7 (158-213)||(6549065-6549120)
chr7 (155-232)||(34470136-34470213)
chr7 (157-243)||(15033299-15033385)
chr7 (15-48)||(28914875-28914908)
chr7 (159-211)||(10599747-10599799)
chr7 (174-210)||(15028808-15028844)
[»] chr8 (11 HSPs)
chr8 (124-246)||(8251300-8251422)
chr8 (124-252)||(2207829-2207956)
chr8 (154-227)||(16890260-16890333)
chr8 (153-214)||(30653622-30653683)
chr8 (154-230)||(2520125-2520201)
chr8 (158-245)||(1445418-1445505)
chr8 (154-252)||(2152378-2152477)
chr8 (173-211)||(30870752-30870790)
chr8 (125-246)||(31658917-31659037)
chr8 (170-213)||(40314312-40314355)
chr8 (187-249)||(6396452-6396514)
[»] chr2 (17 HSPs)
chr2 (155-244)||(39063587-39063676)
chr2 (155-249)||(38214174-38214268)
chr2 (143-252)||(3268856-3268965)
chr2 (143-252)||(3269415-3269524)
chr2 (143-252)||(3269974-3270083)
chr2 (155-232)||(21794914-21794992)
chr2 (143-214)||(16781357-16781428)
chr2 (155-214)||(40664331-40664390)
chr2 (143-252)||(38496531-38496640)
chr2 (159-253)||(40503932-40504026)
chr2 (143-252)||(4015769-4015878)
chr2 (155-244)||(19285946-19286035)
chr2 (170-249)||(32872402-32872481)
chr2 (170-232)||(14200375-14200437)
chr2 (170-212)||(34309310-34309352)
chr2 (143-205)||(2761616-2761680)
chr2 (175-212)||(44883181-44883218)
[»] chr3 (17 HSPs)
chr3 (155-253)||(40344925-40345021)
chr3 (154-245)||(17003569-17003659)
chr3 (154-229)||(35455387-35455460)
chr3 (154-230)||(36659264-36659340)
chr3 (154-245)||(45261428-45261517)
chr3 (155-225)||(8825352-8825422)
chr3 (170-234)||(46918471-46918535)
chr3 (154-211)||(42279228-42279285)
chr3 (170-235)||(49983783-49983848)
chr3 (154-213)||(43320129-43320188)
chr3 (170-235)||(24650196-24650261)
chr3 (14-47)||(27636771-27636804)
chr3 (14-47)||(27639809-27639842)
chr3 (158-211)||(27828545-27828598)
chr3 (143-208)||(28695646-28695713)
chr3 (16-48)||(43598863-43598895)
chr3 (158-214)||(52427083-52427139)
[»] chr4 (10 HSPs)
chr4 (170-249)||(18838812-18838891)
chr4 (127-252)||(31707317-31707439)
chr4 (153-214)||(33721602-33721663)
chr4 (154-252)||(47231565-47231661)
chr4 (170-242)||(42183528-42183601)
chr4 (154-244)||(30615182-30615272)
chr4 (143-213)||(32599740-32599809)
chr4 (160-211)||(42312399-42312450)
chr4 (154-214)||(44720574-44720634)
chr4 (179-249)||(34319612-34319682)
[»] scaffold0024 (1 HSPs)
scaffold0024 (124-246)||(154404-154526)
[»] chr5 (11 HSPs)
chr5 (171-252)||(14417914-14417995)
chr5 (143-252)||(18705057-18705166)
chr5 (143-215)||(6688884-6688956)
chr5 (143-213)||(2225677-2225747)
chr5 (170-214)||(7735850-7735894)
chr5 (170-230)||(29948075-29948135)
chr5 (154-249)||(11691051-11691146)
chr5 (154-252)||(11983574-11983671)
chr5 (170-214)||(14917819-14917863)
chr5 (158-235)||(4449514-4449589)
chr5 (15-48)||(6447478-6447511)
[»] chr1 (14 HSPs)
chr1 (153-230)||(31181042-31181119)
chr1 (158-235)||(42454868-42454945)
chr1 (158-213)||(28165121-28165176)
chr1 (170-252)||(39150189-39150270)
chr1 (153-213)||(17988145-17988205)
chr1 (154-245)||(9851805-9851896)
chr1 (179-248)||(28469995-28470064)
chr1 (154-230)||(31003576-31003652)
chr1 (154-212)||(31152533-31152589)
chr1 (200-249)||(26976609-26976658)
chr1 (158-239)||(46443772-46443852)
chr1 (153-252)||(2619677-2619777)
chr1 (158-206)||(25130217-25130265)
chr1 (158-201)||(45691597-45691640)
[»] scaffold0088 (1 HSPs)
scaffold0088 (154-214)||(51369-51429)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 7927101 - 7926862
Alignment:
Q  15 gacaccccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaactactccctccggtctttattataagnnnnnnn 114  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||           
T  7927101 gacatcccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaattactccctccggtctttattataagaaaataa 7927002  T
Q  115 nnnnnnnnn-catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
              ||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  7927001 aacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataaaaaattgtgaagcattaaataca 7926902  T
Q  214 ctctttaatatttaaaagacaactattaaataaggggtat 253  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7926901 ctctttaatattaaaaagacaactattaaataaggggtat 7926862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 34837113 - 34837240
Alignment:
Q  125 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 224  Q
    ||||||| |||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||  | |||||||    
T  34837113 atcaaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatat 34837212  T
Q  225 ttaaaagacaactattaaataaggggta 252  Q
    | |||||||||  |||||||||||||||    
T  34837213 taaaaagacaagcattaaataaggggta 34837240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7929100 - 7929036
Alignment:
Q  20 cccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaacta 84  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7929100 cccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaacta 7929036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 180526 - 180397
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 223  Q
    ||||||||||||||| |  |||||||||  |||||||||||||| ||||||||||||||||| |||||||||| |||| | |||||||||     |||||    
T  180526 catcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaata 180427  T
Q  224 tttaaaagacaactattaaataaggggtat 253  Q
    || |||||||||  ||||||||||||||||    
T  180426 ttaaaaagacaaacattaaataaggggtat 180397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 12143711 - 12143768
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||    
T  12143711 taactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 31116476 - 31116418
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||||| ||||||||||||||||| ||| | |||||||||||||| ||||||    
T  31116476 aactttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaataca 31116418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 12453713 - 12453778
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 235  Q
    ||||||||||||| || ||||||| || |||||||||||| ||| || ||||||||||||||||||    
T  12453713 tttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaagacaa 12453778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 6658018 - 6657939
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||  ||||||| ||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgaggg 6657939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 31117401 - 31117343
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||||| ||||||||||||||| | ||| | |||||||||||||| ||||||    
T  31117401 aactttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaataca 31117343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 41508286 - 41508158
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 223  Q
    |||| |||||||||| |  |||||||||  |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||| |  |||||    
T  41508286 catcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaata 41508187  T
Q  224 tttaaaagacaactattaaataaggggta 252  Q
    || |||||||||  |||||||||||||||    
T  41508186 ttaaaaagacaaacattaaataaggggta 41508158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 20949228 - 20949168
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  20949228 taactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacac 20949168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 45072480 - 45072569
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||||||| |  ||||||||| |||| ||||||||||  |||| |||||||| ||||||||||| |||||| |||||||||||    
T  45072480 catcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaataca 45072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 12485443 - 12485371
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacact 215  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||    
T  12485443 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacact 12485371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 12506875 - 12506803
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacact 215  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||    
T  12506875 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacact 12506803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 7307608 - 7307501
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    |||||||||  |||| ||||| |||  ||||||||||||| |||||||||||||||||| |||||||||||  |  ||||||| |||| ||||   ||||    
T  7307608 attaattagggtaaccttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaa 7307509  T
Q  243 ataagggg 250  Q
    ||||||||    
T  7307508 ataagggg 7307501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 6549065 - 6549120
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||  ||||| |||||||| | |||||||||||||||||||||||||||    
T  6549065 tttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaataca 6549120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 34470213 - 34470136
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga 232  Q
    |||||||||||||  ||||||||||||  | | || |||||||||||| |||||||||||||  ||||||| ||||||    
T  34470213 aactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaaga 34470136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 15033299 - 15033385
Alignment:
Q  157 ctttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaa 243  Q
    |||||||||| | ||||||||||||| || ||||||| || ||||  ||| |||| ||||  ||||||| ||||||||| |||||||    
T  15033299 ctttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaa 15033385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 28914908 - 28914875
Alignment:
Q  15 gacaccccacttattcactttaaagatgaatttc 48  Q
    ||||||||||||||||||||||||| ||||||||    
T  28914908 gacaccccacttattcactttaaaggtgaatttc 28914875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 10599747 - 10599799
Alignment:
Q  159 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    |||||||| | |||||||||||||||||||||||  |||||||  ||||||||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaata 10599799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 15028844 - 15028808
Alignment:
Q  174 caaatataccctcataaaaaattgtgaaacattaaat 210  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaat 15028808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 8251422 - 8251300
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 223  Q
    ||||||||||||||| |  |||||||||  ||  ||||||||||  |||||||||||||||||||||||||||||||| ||||||||| ||||  |||||    
T  8251422 catcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaata 8251323  T
Q  224 tttaaaagacaactattaaataa 246  Q
    || |||||||||| |||||||||    
T  8251322 ttaaaaagacaaccattaaataa 8251300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 2207956 - 2207829
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 223  Q
    ||||||||||| ||| |  |||| ||||  ||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||    
T  2207956 catcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatacacccattaata 2207858  T
Q  224 tttaaaagacaactattaaataaggggta 252  Q
    || |||| ||||  |||||||||||||||    
T  2207857 ttaaaaatacaaacattaaataaggggta 2207829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 16890260 - 16890333
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattta 227  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  16890260 taactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatattta 16890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 30653622 - 30653683
Alignment:
Q  153 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  30653622 ataactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacac 30653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 2520125 - 2520201
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 230  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| |||  ||||||||||||    
T  2520125 taactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaa 2520201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 1445505 - 1445418
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaata 245  Q
    ||||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||  |||||| ||||||| ||  ||||||||    
T  1445505 tttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaata 1445418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 2152477 - 2152378
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggta 252  Q
    ||||||||||||||  |||| ||||||||||| ||||||||||||||| ||||||||| ||||  |||||||  |||||| ||  |||||||||||||||    
T  2152477 taactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggta 2152378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30870752 - 30870790
Alignment:
Q  173 acaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  30870752 acaaatatacccttataaaaaattgtgaaacattaaata 30870790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 31659037 - 31658917
Alignment:
Q  125 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 224  Q
    ||||||| |||||| |  ||||||||| |||| ||||||||||  |||||||||||| ||||||| |||||| || | |||||||||||  |  || |||    
T  31659037 atcaaaatcaatacactcattaattagtataattttttgaatatttttacaaatatatcctcata-aaaattatgcagcattaaatacatccactagtat 31658939  T
Q  225 ttaaaagacaactattaaataa 246  Q
    | |||||||||  |||||||||    
T  31658938 taaaaagacaaacattaaataa 31658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 40314355 - 40314312
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    |||||||||||| | |||||||||||| ||||||||||||||||    
T  40314355 tttacaaatatatcttcataaaaaattatgaaacattaaataca 40314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 6396452 - 6396514
Alignment:
Q  187 ataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    |||||||  |||||||||||||||||||||  | ||||| ||||||||| | |||||||||||    
T  6396452 ataaaaatctgtgaaacattaaatacactcactgatattaaaaagacaattgttaaataaggg 6396514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 39063587 - 39063676
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaat 244  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |  ||||||| |||||| || ||||||||    
T  39063587 aactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaat 39063676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 38214268 - 38214174
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||    ||||||| |||||| || |||||||| ||||    
T  38214268 aactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgaggg 38214174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 3268965 - 3268856
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3268965 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3268866  T
Q  243 ataaggggta 252  Q
    ||||||||||    
T  3268865 ataaggggta 3268856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 3269524 - 3269415
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3269524 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269425  T
Q  243 ataaggggta 252  Q
    ||||||||||    
T  3269424 ataaggggta 3269415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 3270083 - 3269974
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3270083 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269984  T
Q  243 ataaggggta 252  Q
    ||||||||||    
T  3269983 ataaggggta 3269974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 21794992 - 21794914
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataa-aaaattgtgaaacattaaatacactctttaatatttaaaaga 232  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||| ||||||    
T  21794992 aactttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 16781428 - 16781357
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||  ||| ||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  16781428 attaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacac 16781357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 40664390 - 40664331
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||    
T  40664390 aactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacac 40664331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 38496640 - 38496531
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    |||||||||  ||||||||||||||  |||||||||||||||| |||||||  || ||||||||||||||||    ||||||| |||| ||||   ||||    
T  38496640 attaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgttaa 38496541  T
Q  243 ataaggggta 252  Q
    ||||||||||    
T  38496540 ataaggggta 38496531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 40504026 - 40503932
Alignment:
Q  159 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 253  Q
    |||||||||  |||||| ||||||||||||||||| ||||||| |||||||| |||    ||||||| |||||||||  | ||||||||||||||    
T  40504026 ttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtat 40503932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 4015769 - 4015878
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    |||||||||  ||||||||||||||| | || |||||||||||| | ||||||| ||||||||||||| |||    |||||||  ||||||||  |||||    
T  4015769 attaattagtctaactttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaa 4015868  T
Q  243 ataaggggta 252  Q
     |||||||||    
T  4015869 ctaaggggta 4015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 19286035 - 19285946
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaat 244  Q
    |||||||| ||||| |||||||||||| ||  ||| ||| ||||||| ||||||||||| ||  ||||||| ||||||||| ||||||||    
T  19286035 aactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaat 19285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 32872481 - 32872402
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    ||||||||||||||||||||||||||||||||  |||||||| || |  ||||||| ||| |||||  ||||||| ||||    
T  32872481 tttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattaggg 32872402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 14200375 - 14200437
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga 232  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||  ||||||| ||||||    
T  14200375 tttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaaga 14200437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 34309352 - 34309310
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatac 212  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  34309352 tttacaaatataccctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 2761680 - 2761616
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatatac--cctcataaaaaattgtgaaacat 205  Q
    |||||||||  ||||||||||||||  |||| |||||||   |||||||||||||||||||||||    
T  2761680 attaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 44883181 - 44883218
Alignment:
Q  175 aaatataccctcataaaaaattgtgaaacattaaatac 212  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatac 44883218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 40344925 - 40345021
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 253  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||  ||||  ||||||| ||||||||| |||||||| ||||||||    
T  40344925 aactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaat--actcactaatattaaaaagacaaatattaaatgaggggtat 40345021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 17003569 - 17003659
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaata 245  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||| ||  ||||||||    
T  17003569 taactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 17003659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 35455460 - 35455387
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaa 229  Q
    ||||||||||||||  | |||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||    
T  35455460 taactttttgaatatttctacaaatatac--tcataaaaaattgtgaaacattaaatacactcactaatatttaaa 35455387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 36659340 - 36659264
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 230  Q
    ||||||||||||||  ||||||| |||||||| |||||||||| ||||||||||||||||||| |||| ||| ||||    
T  36659340 taactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacactcattaacattaaaaa 36659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 45261517 - 45261428
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaata 245  Q
    |||||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||| |  |||||||||||||| ||  ||||||||    
T  45261517 taactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaacattaaata 45261428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 8825352 - 8825422
Alignment:
Q  155 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt 225  Q
    |||||||| ||||  |||| ||||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  8825352 aactttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatatt 8825422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 46918471 - 46918535
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagaca 234  Q
    |||||||||||||||| ||| || ||| |||||||||||||||| || |||||||| ||||||||    
T  46918471 tttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagaca 46918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 42279228 - 42279285
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    ||||||||| ||||  |||||||||||||||||||||||| || ||||| ||||||||    
T  42279228 taacttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 49983848 - 49983783
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 235  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||    
T  49983848 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaa 49983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 43320129 - 43320188
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||||||  |||||||||| ||||| ||||||||| | ||| |||||||||||    
T  43320129 taactttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaataca 43320188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 24650261 - 24650196
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 235  Q
    |||||||||||||  | |||||||||||||||| ||||||||  |||  ||||||| |||||||||    
T  24650261 tttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaa 24650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27636771 - 27636804
Alignment:
Q  14 agacaccccacttattcactttaaagatgaattt 47  Q
    ||||||| ||||||||||||||||||||||||||    
T  27636771 agacacctcacttattcactttaaagatgaattt 27636804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27639809 - 27639842
Alignment:
Q  14 agacaccccacttattcactttaaagatgaattt 47  Q
    ||||||||||||||||||| ||||||||||||||    
T  27639809 agacaccccacttattcaccttaaagatgaattt 27639842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 27828598 - 27828545
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    ||||||||||  |||||||||||||| ||||||||| |||||||| | ||||||    
T  27828598 tttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 28695713 - 28695646
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatat--accctcataaaaaattgtgaaacattaa 208  Q
    |||||||||  ||||||||||||||  |||||||||||  || || ||||||| ||||||||||||||    
T  28695713 attaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaa 28695646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 43598863 - 43598895
Alignment:
Q  16 acaccccacttattcactttaaagatgaatttc 48  Q
    ||||||||||||||||||||||| |||||||||    
T  43598863 acaccccacttattcactttaaaaatgaatttc 43598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 52427083 - 52427139
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||| ||||| || |||| ||||||||||| |||| ||| |||||||||||    
T  52427083 tttttgaatatgtttataattatatcctcataaaaagttgtaaaatattaaatacac 52427139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 18838891 - 18838812
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||| ||  ||||||| ||||    
T  18838891 tttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatgaggg 18838812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 31707317 - 31707439
Alignment:
Q  127 caaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattt 226  Q
    |||||||||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||| || |||| |||   |||||| |  |||||||     
T  31707317 caaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatatta 31707413  T
Q  227 aaaagacaactattaaataaggggta 252  Q
    |||||||||  |||||||||||||||    
T  31707414 aaaagacaaacattaaataaggggta 31707439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 33721602 - 33721663
Alignment:
Q  153 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  33721602 ataactttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacac 33721663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 47231565 - 47231661
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 252  Q
    ||||||||||||||  ||||||| |||||| ||||||||| ||||||| |||||||||||||  ||||||||  ||||||||| |||||||||| ||||    
T  47231565 taactttttgaatatttttacaattatacc-tcataaaaagttgtgaatcattaaatacacttgttaatattataaagacaac-attaaataagaggta 47231661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 42183601 - 42183528
Alignment:
Q  170 tttacaaatataccctcataaaaaa-ttgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    |||||||||||| |||||||||||| ||||||| ||||||||| || | |||||||| ||||||||||||||||    
T  42183601 tttacaaatatatcctcataaaaaaattgtgaagcattaaataaacacattaatattaaaaagacaactattaa 42183528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 30615272 - 30615182
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactct-ttaatatttaaaagacaactattaaat 244  Q
    ||||||||| ||||  |||||||||| ||| | |||||||||| |||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  30615272 taactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaataca-tctactaatattaaaaagacaactattaaat 30615182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 32599740 - 32599809
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||| | |||||||| ||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  32599740 attaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcattaaataca 32599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 42312399 - 42312450
Alignment:
Q  160 tttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 211  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| |||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaata 42312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 44720574 - 44720634
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||| |||||||||  |||| ||||||| |||||||||||||||  |||||||||||||||    
T  44720574 taacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaatacac 44720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 34319682 - 34319612
Alignment:
Q  179 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    |||||||||||||||||||| |||||||||||| |  | | |||||| |||||| ||  ||||||||||||    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataaggg 34319612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 154526 - 154404
Alignment:
Q  124 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 223  Q
    ||||||||||||||| |  |||||||||  |||||| |||||||  |||||||| || ||||||||||||| |||||| |||||||||||| |   ||||    
T  154526 catcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaata 154427  T
Q  224 tttaaaagacaactattaaataa 246  Q
    || |||||||||  |||||||||    
T  154426 ttaaaaagacaaacattaaataa 154404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 14417995 - 14417914
Alignment:
Q  171 ttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 252  Q
    |||||||| |||| ||||||||||||||||| |||||||||||| |  |||||||||||| |||| ||||||| ||||||||    
T  14417995 ttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggta 14417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 18705166 - 18705057
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 242  Q
    |||||||||  ||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||   |||||||| |||| | ||  |||||    
T  18705166 attaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaa 18705067  T
Q  243 ataaggggta 252  Q
    |||| |||||    
T  18705066 ataaagggta 18705057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 6688956 - 6688884
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacact 215  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||| || |||||||||||||    
T  6688956 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacact 6688884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 2225747 - 2225677
Alignment:
Q  143 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    |||||||||  ||||||||  ||||  |||||||||||||| ||||||||| |||||||||||||||||||    
T  2225747 attaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaataca 2225677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 7735894 - 7735850
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  7735894 tttacaaatatacccttataaaaaattgtcaaacattaaatacac 7735850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 29948075 - 29948135
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 230  Q
    ||||||||||||| || |||||||||| | ||||||||||||||||| |||||||| ||||    
T  29948075 tttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaaaaa 29948135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 11691051 - 11691146
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    ||||||||||||||  |||||||||| | |||||||||| ||| ||||| |||||||||||||  ||| ||| |||||| ||  ||||||| ||||    
T  11691051 taactttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgaggg 11691146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 11983574 - 11983671
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 252  Q
    ||||||||||||||  ||||||||||||| ||  ||||| ||||||||||||||||||||  |  ||||||| |||||| ||  ||||||| |||||||    
T  11983574 taactttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggta 11983671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 14917863 - 14917819
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||    
T  14917863 tttacaaatataccctcgtaaaaaattgtgaagaattaaatacac 14917819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 4449589 - 4449514
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 235  Q
    ||||||||||  ||||||||||||||||||| | ||||||||  ||||||||||||  | |||| ||| |||||||||    
T  4449589 tttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaa 4449514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 6447511 - 6447478
Alignment:
Q  15 gacaccccacttattcactttaaagatgaatttc 48  Q
    |||||||||||||||||||||||| |||||||||    
T  6447511 gacaccccacttattcactttaaaaatgaatttc 6447478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31181042 - 31181119
Alignment:
Q  153 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 230  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||||||||||||||||||||||||  ||||||| ||||    
T  31181042 ataactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaa 31181119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 42454868 - 42454945
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 235  Q
    ||||||||||  |||| |||||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||    
T  42454868 tttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaa 42454945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 28165121 - 28165176
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  28165121 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca 28165176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 39150189 - 39150270
Alignment:
Q  170 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 252  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||| |||| | ||  |||||||||||||||    
T  39150189 tttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggta 39150270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 17988145 - 17988205
Alignment:
Q  153 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 213  Q
    |||||||||  ||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  17988145 ataacttttaaaataattttacaaatatatcctcataataaattgtgaaacattaaataca 17988205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 9851805 - 9851896
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaata 245  Q
    ||||||||||||||  |||||||||||||| | |||||| | |||||||||||||||| || |  |||||||||||||| ||  ||||||||    
T  9851805 taactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaata 9851896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 28470064 - 28469995
Alignment:
Q  179 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataagg 248  Q
    |||| ||||||||||||||||||||||||||||||| |   ||||||||||||| ||  |||||||||||    
T  28470064 atactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaacattaaataagg 28469995  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 31003576 - 31003652
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 230  Q
    ||||||||||||||  |||||||||||||| | ||| |||||||| |||||||||||||| ||  ||||||| ||||    
T  31003576 taactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 31152589 - 31152533
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatac 212  Q
    ||||||||||||||  ||||||||||||| ||||||||||  |||||||||||||||||    
T  31152589 taactttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatac 31152533  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 26976609 - 26976658
Alignment:
Q  200 aaacattaaatacactctttaatatttaaaagacaactattaaataaggg 249  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| ||||    
T  26976609 aaacattaagtacactctttaatattaaaaagacaaatattaaatgaggg 26976658  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 46443852 - 46443772
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactat 239  Q
    ||||||||||  ||||||||||||||| ||| |||||||||||||||||| ||||| ||  ||| ||| |||||| ||||||    
T  46443852 tttttgaatatttttacaaatatacccacat-aaaaattgtgaaacattatatacattcactaacattaaaaagagaactat 46443772  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 2619677 - 2619777
Alignment:
Q  153 ataactttttgaataagtttacaaatataccctcat-aaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggt 251  Q
    |||||||||||||||  | | ||| ||||||||||| |||||||||| || |||||||| || ||| |||| ||||||| ||||  ||||||| ||||||    
T  2619677 ataactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaatgaggggt 2619776  T
Q  252 a 252  Q
    |    
T  2619777 a 2619777  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 25130265 - 25130217
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacatt 206  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  25130265 tttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 45691597 - 45691640
Alignment:
Q  158 tttttgaataagtttacaaatataccctcataaaaaattgtgaa 201  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  45691597 tttttgaatatttttacaaatataccctcataaaaatttgtgaa 45691640  T

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Target: scaffold0088 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 51429 - 51369
Alignment:
Q  154 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 214  Q
    |||| |||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||    
T  51429 taacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacac 51369  T

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