View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12351_low_1 (Length: 436)

Name: NF12351_low_1
Description: NF12351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12351_low_1
NF12351_low_1
[»] chr7 (32 HSPs)
chr7 (6-436)||(29578016-29578446)
chr7 (16-436)||(29582185-29582605)
chr7 (159-399)||(8609464-8609704)
chr7 (149-424)||(6789049-6789324)
chr7 (228-399)||(27831256-27831427)
chr7 (228-399)||(17259857-17260028)
chr7 (197-399)||(8575911-8576113)
chr7 (197-399)||(8581285-8581487)
chr7 (198-399)||(7878114-7878315)
chr7 (228-399)||(8590254-8590425)
chr7 (228-399)||(17267555-17267726)
chr7 (234-317)||(27846569-27846652)
chr7 (266-399)||(8102321-8102454)
chr7 (234-399)||(8545255-8545420)
chr7 (197-399)||(8569896-8570098)
chr7 (195-405)||(10494749-10494959)
chr7 (27-76)||(8537454-8537503)
chr7 (266-379)||(8667073-8667186)
chr7 (228-316)||(3146880-3146968)
chr7 (276-399)||(8017794-8017917)
chr7 (23-76)||(8383577-8383630)
chr7 (259-316)||(8537683-8537740)
chr7 (266-310)||(13333838-13333882)
chr7 (279-318)||(8383338-8383377)
chr7 (29-76)||(8601394-8601441)
chr7 (278-307)||(1301127-1301156)
chr7 (23-76)||(8569725-8569778)
chr7 (260-405)||(8616329-8616474)
chr7 (140-181)||(17259764-17259805)
chr7 (140-181)||(17267467-17267508)
chr7 (6-70)||(8581097-8581161)
chr7 (266-322)||(39985300-39985356)
[»] chr4 (3 HSPs)
chr4 (149-399)||(35131993-35132243)
chr4 (195-405)||(30774835-30775045)
chr4 (241-357)||(9336314-9336430)
[»] chr1 (4 HSPs)
chr1 (228-405)||(15594650-15594827)
chr1 (204-398)||(34467170-34467364)
chr1 (278-399)||(4678938-4679059)
chr1 (228-301)||(52549425-52549498)
[»] chr2 (9 HSPs)
chr2 (195-399)||(16657898-16658102)
chr2 (157-316)||(43624957-43625116)
chr2 (149-355)||(12245831-12246037)
chr2 (195-409)||(16662363-16662577)
chr2 (228-355)||(11999024-11999151)
chr2 (228-346)||(14703024-14703142)
chr2 (259-346)||(7541873-7541960)
chr2 (271-435)||(12234349-12234512)
chr2 (229-433)||(12258928-12259132)
[»] chr8 (2 HSPs)
chr8 (237-433)||(12528129-12528325)
chr8 (234-329)||(43744438-43744533)
[»] chr5 (1 HSPs)
chr5 (195-317)||(28219501-28219623)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 29578446 - 29578016
Alignment:
Q  6 ggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatcta 105  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578446 ggaggaacaaagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatcta 29578347  T
Q  106 cacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578346 cacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcga 29578247  T
Q  206 caagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcg 305  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29578246 caagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtca 29578147  T
Q  306 gggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcat 405  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29578146 gggtttatgctcatgcacaaatccctacccttgaaaaagtcttgcaatagtttccgcactttgggaattctagatgaacctccaacaaggacaatttcat 29578047  T
Q  406 gtaccatactctggtccatgtaagcatcacg 436  Q
    |||||||||||||||||||||||||||||||    
T  29578046 gtaccatactctggtccatgtaagcatcacg 29578016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 29582605 - 29582185
Alignment:
Q  16 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 115  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| |||||||||||||||||||||    
T  29582605 agagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaattgagacaccaaattggttatctacacttgtctt 29582506  T
Q  116 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 215  Q
    |||||| || || ||||||||   |||||| ||||||||| |||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  29582505 acatctttcttctgtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgta 29582406  T
Q  216 atatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgc 315  Q
    ||||||  |||||  |||| |||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  29582405 atatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgc 29582306  T
Q  316 tcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcatgtaccatact 415  Q
    |||||||||||||| | ||||||||||| ||||||||||| |   ||| ||||||||||||||| || || |||| |||||| || |||| |||  ||||    
T  29582305 tcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaattctagaagagccaccaataaggacgatatcatctacactact 29582206  T
Q  416 ctggtccatgtaagcatcacg 436  Q
    || | |||||| |||||||||    
T  29582205 cttgaccatgttagcatcacg 29582185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 159 - 399
Target Start/End: Original strand, 8609464 - 8609704
Alignment:
Q  159 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaa 258  Q
    ||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||||| ||||| ||  ||||| ||||||||    |||||||| |||     
T  8609464 ggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcac 8609563  T
Q  259 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagttt 358  Q
     ||||||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| ||||||||| | || |||||||||||||||| ||| |     
T  8609564 ccaacaaagcagcctggacagcagcaccataagcaaccgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgcagtagctg 8609663  T
Q  359 ccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    |  || ||| ||||| ||||| |||||||||||||| ||||    
T  8609664 cttcactttcggaatcctagaagaacctccaacaagaacaa 8609704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 424
Target Start/End: Original strand, 6789049 - 6789324
Alignment:
Q  149 agtgttcttaggaatcactacactcatgacatctccttttg-tccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattctt 247  Q
    ||||||| |||||||||| ||||||||||||| |||| ||  | | | ||||||| ||||| ||||||| ||||  ||  ||||| ||||||||| ||||    
T  6789049 agtgttcctaggaatcaccacactcatgacatttcctattactgcct-taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactctt 6789147  T
Q  248 gatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtct 347  Q
       ||| ||  |||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||||||| | ||| ||||||  |||    
T  6789148 agagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttct 6789247  T
Q  348 tgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcatgtaccatactctggtccat 424  Q
    ||||||||||   ||| ||||||||||||||| || || |||||||||||||  |||| ||| ||||||| ||||||    
T  6789248 tgcaatagttgttgcactttgggaattctagaagacccaccaacaaggacaacatcatttacaatactcttgtccat 6789324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 399
Target Start/End: Complemental strand, 27831427 - 27831256
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    ||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || || || |||||| |||||||||    
T  27831427 accaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaat 27831328  T
Q  328 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    || | ||||||||||||||   |||||| | | ||| ||||||||| || || || || |||||||||||||    
T  27831327 cctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaa 27831256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 228 - 399
Target Start/End: Original strand, 17259857 - 17260028
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| |||| || |    
T  17259857 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataatt 17259956  T
Q  328 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    || |||||||||| || || |||||||||| | ||| ||| ||||| ||||| || || |||||||||||||    
T  17259957 ccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaa 17260028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 399
Target Start/End: Original strand, 8575911 - 8576113
Alignment:
Q  197 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 296  Q
    ||||| |||||| ||||||| |||||  || ||||| ||||||||||||||  |||| ||| ||||||||||||| || ||| | |||||||||||||||    
T  8575911 accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaaca 8576010  T
Q  297 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 396  Q
    ||||| || ||||| |||||| | || || ||| | ||||||||||  || || ||||| |  | || ||| ||||| ||||| ||||| ||||||||||    
T  8576011 gcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaagga 8576110  T
Q  397 caa 399  Q
    |||    
T  8576111 caa 8576113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 399
Target Start/End: Original strand, 8581285 - 8581487
Alignment:
Q  197 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 296  Q
    |||||| ||||| ||||||| ||||| ||| | ||| ||||||||| |||| ||||| ||| | | |||||||||||| | ||| |||||||||||||||    
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  297 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 396  Q
    ||||| || ||||| |||||| |||| || ||| | |||| |||||| || || ||||| |  | || ||| ||||| ||||| ||||| ||||||||||    
T  8581385 gcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaagga 8581484  T
Q  397 caa 399  Q
    |||    
T  8581485 caa 8581487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 198 - 399
Target Start/End: Complemental strand, 7878315 - 7878114
Alignment:
Q  198 ccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 297  Q
    ||||| ||||| || |||| ||||  ||| |||||||| ||||||||||| || ||||||   | || ||||||||| ||||||||||||||||||||||    
T  7878315 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 7878216  T
Q  298 cctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggac 397  Q
    | || || ||||| |||||  |||| | |||| | ||||| |||||||| |||||||| | | ||| |||| |||| |||||||| || |||||||| ||    
T  7878215 cttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaatcctagatgatccaccaacaagtac 7878116  T
Q  398 aa 399  Q
    ||    
T  7878115 aa 7878114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 399
Target Start/End: Original strand, 8590254 - 8590425
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    |||||||| ||||||||||| || ||||||   | ||||||||| || |||||||||||||||||||||||||| || || || |||||  || | | ||    
T  8590254 accaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagat 8590353  T
Q  328 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    || | ||| | ||||||||||||||||| | | ||| ||||||||| ||||| ||||| |||||||| ||||    
T  8590354 ccttccccataaaaaagtcttgcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaa 8590425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 399
Target Start/End: Original strand, 17267555 - 17267726
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| |||||||||||||||||||| || ||||| || ||  |||| || |    
T  17267555 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataatt 17267654  T
Q  328 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    || | |||||||| ||||  |||||||||| | ||| ||| ||||| ||||| || || |||||||||||||    
T  17267655 ccttccccttgaagaagttctgcaatagttgctgcactttcggaatcctagaagacccaccaacaaggacaa 17267726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 27846652 - 27846569
Alignment:
Q  234 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctc 317  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| || ||||| ||||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctc 27846569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 8102321 - 8102454
Alignment:
Q  266 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcatt 365  Q
    |||||| || ||||| ||||||||||||||||||||||||||||| |||||  |||| |  ||| |||| ||||| ||||||||||| |||| | | | |    
T  8102321 agcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctgaact 8102420  T
Q  366 ttgggaattctagatgaacctccaacaaggacaa 399  Q
    |||||||| |||| |||||| |||||||| ||||    
T  8102421 ttgggaatcctagttgaaccaccaacaagaacaa 8102454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 399
Target Start/End: Original strand, 8545255 - 8545420
Alignment:
Q  234 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatac 333  Q
    ||||| ||||||||  || | ||| ||| |||||||||||| |||||||||||||||||||||||||| || ||||| |||||| |||| || ||| | |    
T  8545255 tttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcctcatcagggttaatgctcttgcataattccttcc 8545354  T
Q  334 ccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    |||| ||||| || || ||||| |  | || ||| ||||| ||||| ||||| |||||||||||||    
T  8545355 ccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgccaacaaggacaa 8545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 399
Target Start/End: Original strand, 8569896 - 8570098
Alignment:
Q  197 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 296  Q
    |||||| ||||| ||||||| ||||| ||| ||||| ||||||||| |||| | ||  ||| |   |||| ||||||| | ||||||||| |||||||||    
T  8569896 accaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaaca 8569995  T
Q  297 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 396  Q
    ||||| || ||||| |||||  |||| || ||| | |||| |||||| ||||| ||||| | || || ||| ||||| ||||| ||||| ||||||||||    
T  8569996 gcctcatcagggttaatgctgttgcataattccttcccctggaaaaactcttgtaatagctgcctcactttaggaatcctagaagaaccaccaacaagga 8570095  T
Q  397 caa 399  Q
    |||    
T  8570096 caa 8570098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 405
Target Start/End: Complemental strand, 10494959 - 10494749
Alignment:
Q  195 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 294  Q
    |||||||| ||||| || |||| |||||  |  ||||| || || |||||||| | ||| ||| |||| | ||||||||| |||||||||||||||||||    
T  10494959 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaa 10494860  T
Q  295 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 394  Q
    ||||||| || ||||| || | |||| | || ||| | ||||||||||| ||| ||||||| | | ||| ||||||||| ||||| || || || |||||    
T  10494859 cagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaag 10494760  T
Q  395 gacaatttcat 405  Q
     ||||| ||||    
T  10494759 aacaatatcat 10494749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8537454 - 8537503
Alignment:
Q  27 aaacccaacaagttgttctcactggcttttattctctcaccctcataaac 76  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8537454 aaacccaacaagttgttctcactggctttcattctctcaccctcataaac 8537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 8667073 - 8667186
Alignment:
Q  266 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcatt 365  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | || ||| | ||||||||| | ||| ||||| ||| | ||| |    
T  8667073 agcagcctgaacagctgcaccataagcaacagcctcgtctgggttgatacccatgaataattccttccccttgaaatattctagcaattgttcctgcact 8667172  T
Q  366 ttgggaattctaga 379  Q
    |||||||| |||||    
T  8667173 ttgggaatcctaga 8667186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 3146880 - 3146968
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 316  Q
    ||||| ||||||||||| || | | | ||| ||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||    
T  3146880 accaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaacggcctcatcagggttgatgct 3146968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 8017917 - 8017794
Alignment:
Q  276 acagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattc 375  Q
    ||||| ||||||||||||||||||||||| ||||| || ||| |||| |  ||  |||| ||||| || |||||||| |||| | | | |||||||||||    
T  8017917 acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctctttaccattgaagaaatcttgcaacagttgctgaactttgggaattc 8017818  T
Q  376 tagatgaacctccaacaaggacaa 399  Q
    ||| |||||| |||||||| ||||    
T  8017817 tagttgaaccgccaacaagaacaa 8017794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 8383630 - 8383577
Alignment:
Q  23 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 76  Q
    ||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||    
T  8383630 aaacaaacctaacaagttgttctcattagctttcaatctctcaccctcataaac 8383577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 8537683 - 8537740
Alignment:
Q  259 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 316  Q
    |||||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||    
T  8537683 tcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgct 8537740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 13333882 - 13333838
Alignment:
Q  266 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtt 310  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  13333882 agcagcctgaacagctgcaccataagcaacagcctcatctgggtt 13333838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 8383377 - 8383338
Alignment:
Q  279 gctgcaccataagcaacagcctcgtcggggtttatgctca 318  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  8383377 gctgcaccataagcaacagcctcgtcaggatttatgctca 8383338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 8601394 - 8601441
Alignment:
Q  29 acccaacaagttgttctcactggcttttattctctcaccctcataaac 76  Q
    ||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  8601394 acccaacaagttgttctcacttgcttttaatctctcgccttcataaac 8601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 1301127 - 1301156
Alignment:
Q  278 agctgcaccataagcaacagcctcgtcggg 307  Q
    ||||||||||||||||||||||||||||||    
T  1301127 agctgcaccataagcaacagcctcgtcggg 1301156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 8569725 - 8569778
Alignment:
Q  23 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 76  Q
    ||||||||| | ||||||||| |||||  |||||| ||||||||||||||||||    
T  8569725 aaacaaaccaagcaagttgttgtcactatcttttaatctctcaccctcataaac 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 405
Target Start/End: Original strand, 8616329 - 8616474
Alignment:
Q  260 caacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttc 359  Q
    ||||||||||||||| || ||||| |||  |||||||||||| || || || ||| || ||||||||||| | || | |||||||||   |||||||| |    
T  8616329 caacaaagcagcctgaactgctgccccactagcaacagcctcatcaggattgatgttcttgcacaaatccttcccatcgaaaaagtcactcaatagttcc 8616428  T
Q  360 cgcattttgggaattctagatgaacctccaacaaggacaatttcat 405  Q
     ||| ||| ||||| ||||| || || || ||||| ||||| ||||    
T  8616429 tgcactttaggaatcctagacgagccaccgacaagaacaatatcat 8616474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 17259764 - 17259805
Alignment:
Q  140 aggaattggagtgttcttaggaatcactacactcatgacatc 181  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17259764 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 17267467 - 17267508
Alignment:
Q  140 aggaattggagtgttcttaggaatcactacactcatgacatc 181  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17267467 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 8581097 - 8581161
Alignment:
Q  6 ggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctc 70  Q
    |||||| |||||| |  ||||||||||| ||||||||| ||||| ||| || |||||||||||||    
T  8581097 ggaggaacagagaaatcaaacaaacccagcaagttgttatcacttgctcttgttctctcaccctc 8581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 39985300 - 39985356
Alignment:
Q  266 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgca 322  Q
    ||||||||| ||||| |||||||| ||||||||||| || || ||||||||| ||||    
T  39985300 agcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgca 39985356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 149 - 399
Target Start/End: Original strand, 35131993 - 35132243
Alignment:
Q  149 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 248  Q
    ||||||| |||||||||| ||| |||||| |||||||  | |  |  ||||||| ||||| ||||||| |||    || ||||| ||||||||||| ||     
T  35131993 agtgttcctaggaatcaccacattcatgatatctcctactattgacctaccaagagacaaaggtgtaacatcctgtaacaccaactttggaacatttttt 35132092  T
Q  249 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtctt 348  Q
    ||||| | | |||||||||||||||| || ||||| |||||||| |||||||| |||||||| |||||| ||||||| ||| | || |||||||||| ||    
T  35132093 atgcctttactcaacaaagcagcctgaactgctgccccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagtttt 35132192  T
Q  349 gcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 399  Q
    ||||||| | | ||| ||||||||| ||||| || ||||||||||| ||||    
T  35132193 gcaatagctgctgcactttgggaatcctagaagaccctccaacaagaacaa 35132243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 405
Target Start/End: Original strand, 30774835 - 30775045
Alignment:
Q  195 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 294  Q
    |||||||| ||||| || || | ||||| ||  ||||| |||||  ||||||| ||||| ||| |||| | ||||||||| |||||||| || | |||||    
T  30774835 ataccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 30774934  T
Q  295 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 394  Q
    | ||||| || || || |||||| ||||||||||| | || ||||| || |   ||||||||| | ||| ||||||||| ||||| ||||| || |||||    
T  30774935 ctgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaag 30775034  T
Q  395 gacaatttcat 405  Q
     ||||| ||||    
T  30775035 aacaatatcat 30775045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 9336430 - 9336314
Alignment:
Q  241 cattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaa 340  Q
    ||||||| | ||| ||| |||| | |||||| || |||||||||||||||||||||||||| || ||||| || | |||| | || ||| | ||||||||    
T  9336430 cattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatacccatgaataattccttccccttgaa 9336331  T
Q  341 aaagtcttgcaatagtt 357  Q
    ||| ||| |||||||||    
T  9336330 aaattctagcaatagtt 9336314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 405
Target Start/End: Original strand, 15594650 - 15594827
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    ||||| ||||||||||| || |  || ||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |    
T  15594650 accaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaatt 15594749  T
Q  328 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcat 405  Q
    || | |||| |||||| || | ||||||||   ||| ||||||||| ||||| || || ||||||| |||||| ||||    
T  15594750 cctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgacaatatcat 15594827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 398
Target Start/End: Complemental strand, 34467364 - 34467170
Alignment:
Q  204 gacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgt 303  Q
    ||||| ||||||| ||||| ||  ||||| ||||||||||| || | ||| | | ||||||||||||| |||||||||||  ||||||| |||||||| |    
T  34467364 gacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcat 34467265  T
Q  304 cggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggaca 398  Q
    | ||||| |||||  |||| | |||| |||| |||||||||||  ||||||| | | ||| ||||||||| ||||| || || || |||||||||    
T  34467264 cagggttgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggaca 34467170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 4679059 - 4678938
Alignment:
Q  278 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 377  Q
    |||||||||||||||||||||||| || ||||| || ||| ||||||||||| | | ||| ||||||||||||||||| | | ||| ||||||||| ||     
T  4679059 agctgcaccataagcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctc 4678960  T
Q  378 gatgaacctccaacaaggacaa 399  Q
    |||||||| || ||||| ||||    
T  4678959 gatgaaccacccacaagaacaa 4678938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 52549498 - 52549425
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctc 301  Q
    ||||| |||||||||||||  ||||| ||| ||||||| |||||||| |||||||| |||||||| ||| ||||    
T  52549498 accaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaacctc 52549425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 399
Target Start/End: Complemental strand, 16658102 - 16657898
Alignment:
Q  195 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 294  Q
    |||||||||||||| || |||| ||||| ||| ||||||| ||| |||||||| | ||| ||| |||| | |||||| || ||||||||||| |||||||    
T  16658102 ataccaagcgacaatggggtaacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaa 16658003  T
Q  295 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 394  Q
    |||| || || ||||| || ||  |||| |||||| | ||||||||||||||||||||||| | | ||| ||||||||| |||||||| || || |||||    
T  16658002 cagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagatcctgcactttgggaatcctagatgagccacccacaag 16657903  T
Q  395 gacaa 399  Q
     ||||    
T  16657902 aacaa 16657898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 316
Target Start/End: Original strand, 43624957 - 43625116
Alignment:
Q  157 taggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatc 256  Q
    |||||||||| |||||||||||| |||| ||  |  | |||||||| ||||| || |||| ||||| ||  ||||| |||||||||||||| ||||| |     
T  43624957 taggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgccttt 43625056  T
Q  257 aatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 316  Q
    | |||| | ||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  43625057 actcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgct 43625116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 355
Target Start/End: Complemental strand, 12246037 - 12245831
Alignment:
Q  149 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 248  Q
    ||||||| | |||||||| |||||||||||||| ||| || |  |  ||||||  ||||| || |||| |||   ||| ||||||||||||||||||||     
T  12246037 agtgttccttggaatcaccacactcatgacatcccctattattgacctaccaatggacaaaggagtaacatcctgcaacaccaaatttggaacattctta 12245938  T
Q  249 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtctt 348  Q
    |   | | | ||||||||||||| || |||||||| |||||||||||||||||||| ||||| |||||| ||||||| ||| | || ||||||||||| |    
T  12245937 acatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcct 12245838  T
Q  349 gcaatag 355  Q
    | |||||    
T  12245837 gtaatag 12245831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 409
Target Start/End: Complemental strand, 16662577 - 16662363
Alignment:
Q  195 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 294  Q
    |||||||| ||||| || ||||  |||| ||  ||||| |||||||||| ||| ||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 16662478  T
Q  295 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 394  Q
    ||||||| || ||||| |||||| ||||||| ||| | || ||||| ||||   |||||| || | ||| ||| ||||| ||||| || || || |||||    
T  16662477 cagcctcatcagggttgatgctcttgcacaactccttcccattgaagaagttacgcaataattcctgcacttttggaatcctagacgagcccccgacaag 16662378  T
Q  395 gacaatttcatgtac 409  Q
     ||||| ||||||||    
T  16662377 aacaatatcatgtac 16662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 11999024 - 11999151
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    |||||||||||||||||||| |   | ||| ||||||||||||| || |||||||| |||||||| |||||||| || ||||| |||||| ||||||| |    
T  11999024 accaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaact 11999123  T
Q  328 ccatacccttgaaaaagtcttgcaatag 355  Q
    || | || ||||||||||| || |||||    
T  11999124 ccttcccgttgaaaaagtcatgtaatag 11999151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 14703024 - 14703142
Alignment:
Q  228 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 327  Q
    ||||| || ||||||||||||| | | ||| |||||||||||||||| |||||||| |||||||| ||||| || || ||||| |||||  ||||||| |    
T  14703024 accaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcagggttaatgctgttgcacaact 14703123  T
Q  328 ccatacccttgaaaaagtc 346  Q
    || | |||| |||||||||    
T  14703124 ccttcccctggaaaaagtc 14703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 7541873 - 7541960
Alignment:
Q  259 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtc 346  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| || || || |||||| ||||||| ||| | || |||||||||||    
T  7541873 tcaacaatgcagcctgaacagctgccccataagcaacagcctcatcaggattaatgctcttgcacaagtcctttccattgaaaaagtc 7541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 435
Target Start/End: Original strand, 12234349 - 12234512
Alignment:
Q  271 cctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttggg 370  Q
    |||| ||||||||  |||||||||| ||||| || ||||| || ||| ||||||  ||| | ||||||||||| || |||||||||| | ||| ||||||    
T  12234349 cctgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttggg 12234447  T
Q  371 aattctagatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcac 435  Q
    ||| ||||| || || |||| |||||||| |||||  ||| |||| | |||||| | ||||||||    
T  12234448 aatcctagaggacccgccaataaggacaacttcatccaccctacttttgtccatcttagcatcac 12234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 433
Target Start/End: Complemental strand, 12259132 - 12258928
Alignment:
Q  229 ccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatc 328  Q
    |||| ||||||||||||| |||  | ||| | |||||||||||||| | ||| || ||| |||| |||||||| || || || |||||| ||||||| ||    
T  12259132 ccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacagcctcatcaggattaatgctcttgcacaactc 12259033  T
Q  329 catacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaa 428  Q
      | ||||||||||| || || ||||| | | ||| |||| |||| ||||| || || || ||||||||||  |||| |||  |||||| |||| ||| |    
T  12259032 tttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaaggacaacatcatctacattactcttgtccgtgtta 12258933  T
Q  429 gcatc 433  Q
    |||||    
T  12258932 gcatc 12258928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 237 - 433
Target Start/End: Original strand, 12528129 - 12528325
Alignment:
Q  237 ggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccataccct 336  Q
    |||||| |||| ||||| ||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| || | || ||| | ||||    
T  12528129 ggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgccct 12528228  T
Q  337 tgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatc 433  Q
    ||||||| || |||||||| | |  || ||||||||| ||||| || || |||||||| ||||| |||| |||  |||||| |||||| | ||||||    
T  12528229 tgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatc 12528325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 43744438 - 43744533
Alignment:
Q  234 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatcc 329  Q
    |||||||| || || | ||| ||| |||||||||||||||||||||||||||||  |||||| ||||| || ||||| ||| || | |||||||||    
T  43744438 tttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactgcctcatcagggttaatgttcttacacaaatcc 43744533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 28219501 - 28219623
Alignment:
Q  195 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 294  Q
    |||||||| ||||| ||||||| ||||  ||  ||||| || ||||| || || | ||| ||| ||||||||||||||||||||||||||||||||||||    
T  28219501 ataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaa 28219600  T
Q  295 cagcctcgtcggggtttatgctc 317  Q
    ||||||| || ||||| ||||||    
T  28219601 cagcctcatcagggttaatgctc 28219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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