View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12351_low_3 (Length: 369)
Name: NF12351_low_3
Description: NF12351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12351_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 28922241 - 28921901
Alignment:
| Q |
11 |
cctgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcccctgttgaacaactacctgcactcct |
110 |
Q |
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| T |
28922241 |
cctgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcccctgttgaacaactatctgcacttct |
28922142 |
T |
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| Q |
111 |
taaagaatcaaactctaattgtcagaccttaaacccagaaaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatgtagattgcaga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28922141 |
taaagaatcaaactctaattgtcagaccttaaacccagaaaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatgtaaattgcaga |
28922042 |
T |
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| Q |
211 |
aatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922041 |
aatctgagtactgacatggatgccaatcatgcagtaaaggaaaggcgaagcgcttcggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgt |
28921942 |
T |
|
| Q |
311 |
taagtgacagtgatgaagaggatgtgagtattgaagtaact |
351 |
Q |
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| T |
28921941 |
taagtgacagtgatgaagaggatgtgagtattgaagtaact |
28921901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 100 - 337
Target Start/End: Complemental strand, 28912653 - 28912419
Alignment:
| Q |
100 |
cctgcactccttaaagaatcaaactctaattgtcagaccttaaacccagaaaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatg |
199 |
Q |
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| T |
28912653 |
cctgcacttcttaaagaatcaaactctaattgtcagaccttaaacccaaaaaaatgtggcttgcctcaaccaagta---ctacatctgcttctgaggatg |
28912557 |
T |
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| Q |
200 |
tagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcccgttaaggtgatcgtcaatga |
299 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||| ||||| ||| | ||||||||||||| ||| ||||||| |
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| T |
28912556 |
tagattgcagaaatctgagtattaacatggatgccaatcatacagtaaaggaaaggcgaagcgttactgtttcagatcccgttaaggcaatcatcaatga |
28912457 |
T |
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| Q |
300 |
tgctacagtgttaagtgacagtgatgaagaggatgtga |
337 |
Q |
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|| || || |||||||||||||||||||||||||||| |
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| T |
28912456 |
tgttattgttttaagtgacagtgatgaagaggatgtga |
28912419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 114 - 351
Target Start/End: Complemental strand, 28898137 - 28897900
Alignment:
| Q |
114 |
agaatcaaactctaattgtcagaccttaaacccagaaaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatgtagattgcagaaat |
213 |
Q |
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|||||||||||||| |||||| ||| || | |||| ||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
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| T |
28898137 |
agaatcaaactctagttgtcaaaccctatatccagcaaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaat |
28898038 |
T |
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| Q |
214 |
ctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgttaa |
313 |
Q |
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||||||||| |||||||||||||||| |||||| |||||||||||| | | |||||||||| ||||||| || |||||||||| || | |||| |
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| T |
28898037 |
ctgagtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatcttgttaaggcgactgtcaatgatgttattattttaa |
28897938 |
T |
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| Q |
314 |
gtgacagtgatgaagaggatgtgagtattgaagtaact |
351 |
Q |
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||||||| |||||||||||||||| |||| || ||||| |
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| T |
28897937 |
gtgacagcgatgaagaggatgtgaatattaaaataact |
28897900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 28931170 - 28930985
Alignment:
| Q |
150 |
aaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagg |
249 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||| | |
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| T |
28931170 |
aaaatgtggcttgcctcaaccaagtaacactatatctgcttcttatgatgtagattgcagaaatctgaatactaacatggatgccaatcagacagtaaag |
28931071 |
T |
|
| Q |
250 |
gaaaggcgaagtgttacggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgt |
335 |
Q |
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|||| | ||| |||| |||||||||||| |||||| || ||||||||| || ||||||||||||||||||||||||||||| |
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| T |
28931070 |
gaaattcaaagcgttatggttgctgatcctgttaagccgactgtcaatgattttattgtgttaagtgacagtgatgaagaggatgt |
28930985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 28912779 - 28912696
Alignment:
| Q |
13 |
tgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcccctgttgaacaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
28912779 |
tgtgttaattttcatgacttaggtccaaaatctccggtgaaaaataaccaagatgatccagtctttcctgccactgttgaacaa |
28912696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 329
Target Start/End: Complemental strand, 28888420 - 28888258
Alignment:
| Q |
167 |
aatcaagtaacactatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttac |
266 |
Q |
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|||||||||| |||||| |||||||| ||||||||||||||||||||| || || | |||||||| |||| |||||| ||||||| ||| |||| |
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| T |
28888420 |
aatcaagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttat |
28888321 |
T |
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| Q |
267 |
ggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaaga |
329 |
Q |
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| T |
28888320 |
ggttgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaaga |
28888258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 28898287 - 28898203
Alignment:
| Q |
12 |
ctgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcccctgttgaacaa |
96 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||||||||||| ||||||||||| |
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| T |
28898287 |
ctgtgttgattttcatgacttaggtccaaaatctacagtgaaaaaaaacaaagatgaaacagcctttcctgccactgttgaacaa |
28898203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 28888609 - 28888536
Alignment:
| Q |
11 |
cctgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcc |
84 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| | |||||||||||||| |
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| T |
28888609 |
cctgtgttacttttcatgacttaggtccaaaaactccagtgaaaaataatcaagatggtacagcctttcctgcc |
28888536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 28931371 - 28931296
Alignment:
| Q |
21 |
ttttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctttcctgcccctgttgaacaa |
96 |
Q |
| |
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||||||| |||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||| |||| |
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| T |
28931371 |
ttttcattacttaggtccaaaaactccagtgaaaaataaccaagatgatacaacctttcctgccactgttgtacaa |
28931296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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