View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12352_high_2 (Length: 402)
Name: NF12352_high_2
Description: NF12352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12352_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 46900514 - 46900895
Alignment:
| Q |
24 |
tccattgcaaactattaatatgttttcagaaaaacttctactcactatccaaatccaaaaccctgaaaatctagctacagaattt---atttatctatct |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46900514 |
tccattgcaaactattaatatgttttcagaaaaacttctactcactatccaaatccaaaaccctgaaaatctagctacagaattttttatttatctatct |
46900613 |
T |
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| Q |
121 |
aatcaaagaaaaatgagtcaagaacaaccaaggcgtccacaagctggtcaacaccccatcaaatacggcgacgttttacctgtctccggcgacctttctc |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900614 |
aatctaagaaaaatgagtcaagaacaaccaaggcgtccacaagctggtcaagaccccatcaaatacggcgacgttttacctgtctccggcgacctttctc |
46900713 |
T |
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| Q |
221 |
agaagcccattacaccggaagatgccgccatgatgcagagtgcagagagccgtgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900714 |
agaagcccattacaccggaagatgccgccatgatgcagagtgcagagagccgtgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatc |
46900813 |
T |
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| Q |
321 |
cgccgctacacgaaatgagcaggctggaatcgtcggtcataaagacgtcacagatgtcaccggtgaccgtggcgtgaccgtc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900814 |
cgccgctacacgaaatgagcaggctggaatcgtcggtcataaagacgtcacagatgtcaccggtgaccgtggcgtgaccgtc |
46900895 |
T |
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