View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12352_low_1 (Length: 746)

Name: NF12352_low_1
Description: NF12352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12352_low_1
NF12352_low_1
[»] chr8 (1 HSPs)
chr8 (65-738)||(1975890-1976563)


Alignment Details
Target: chr8 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 65 - 738
Target Start/End: Complemental strand, 1976563 - 1975890
Alignment:
Q  65 aatgataaatctgacggtgaaggcgtactcaatttagatgaagagcaagatatcggatacgatactgtttgtgcaatttgtgataacggtggtgaaatac 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976563 aatgataaatctgacggtgaaggcgtactcaatttagatgaagagcaagatatcggatacgatactgtttgtgcaatttgtgataacggtggtgaaatac 1976464  T
Q  165 ttccgtatgtattcacccaccatataagtctctaaccataaagacttattattgtcctttgcttatcatctttcatcaaaaagtaaataacctttctcnn 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1976463 ttccgtatgtattcacccaccatataagtctctaaccataaagacttattattgtcctttgcttatcatctttcatcaaaaagtaaataacctttctctt 1976364  T
Q  265 nnnnnnacttaactgtttattttaattttaatgatccagttgtgaaggaagatgtttgagatccttccatgcaaccttagaggatggtagagattcattg 364  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976363 ttttttgcttaactgtttattttaattttaatgatccagttgtgaaggaagatgtttgagatccttccatgcaaccttagaggatggtagagattcattg 1976264  T
Q  365 tgtgcatctcttggttacactcgtactgaagtcaatgtaagtaatgtcccaattttcctttactatattttttcaataaattccccaactcagagttagc 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976263 tgtgcatctcttggttacactcgtactgaagtcaatgtaagtaatgtcccaattttcctttactatattttttcaataaattccccaactcagagttagc 1976164  T
Q  465 attatttttctttgattccaactgaatttaataaaaccaaatcttaactttgcaggcttttccaaacttctattgtgaaaattgtaaacataagaagcat 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976163 attatttttctttgattccaactgaatttaataaaaccaaatcttaactttgcaggcttttccaaacttctattgtgaaaattgtaaacataagaagcat 1976064  T
Q  565 caatgctttgcatgtggcaaattgggttcatctgatgaatcatctaatccagaggtatatttcagatcatgtttagctttcacatacaatgcatctggcc 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976063 caatgctttgcatgtggcaaattgggttcatctgatgaatcatctaatccagaggtatatttcagatcatgtttagctttcacatacaatgcatctggcc 1975964  T
Q  665 tttctcagccttgacagaatttcaaatgaattacctccaaggatatgtcattagttttttctctcccacaggtt 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1975963 tttctcagccttgacagaatttcaaatgaattacctccaaggatatgtcattagttttttctctcccacaggtt 1975890  T

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