View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12352_low_5 (Length: 295)

Name: NF12352_low_5
Description: NF12352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12352_low_5
NF12352_low_5
[»] chr6 (2 HSPs)
chr6 (163-276)||(3711884-3711997)
chr6 (9-119)||(3712056-3712166)
[»] chr5 (2 HSPs)
chr5 (163-276)||(27879051-27879165)
chr5 (9-119)||(27879224-27879332)
[»] chr8 (4 HSPs)
chr8 (9-119)||(9200843-9200953)
chr8 (14-119)||(44062743-44062848)
chr8 (16-55)||(33484248-33484287)
chr8 (23-79)||(43637678-43637734)
[»] chr2 (1 HSPs)
chr2 (9-119)||(37631048-37631158)
[»] scaffold0143 (1 HSPs)
scaffold0143 (16-52)||(2394-2430)
[»] chr4 (1 HSPs)
chr4 (13-81)||(29964020-29964088)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 3711997 - 3711884
Alignment:
Q  163 tttgtctactttttgtaaattaacaagataattaagccactggtatatgaaaatcgtctatgagaaagaaaaaataaaagtataaattgcaacaaaaagt 262  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  3711997 tttgtccactttttgtaaattaacaacataattaagccactggtatatgaaaatcgtctctgagaaagaaaaaataaaagtatgaattgcaacaaaaagt 3711898  T
Q  263 ttaaacaagactaa 276  Q
    ||||| ||||||||    
T  3711897 ttaaataagactaa 3711884  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 3712166 - 3712056
Alignment:
Q  9 agcagagagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagattcaaatattgcgggtcccacagcttttt 108  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  3712166 agcaaagagagaagttgaagagagatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagatccaaatattgcggatcccactgcttttt 3712067  T
Q  109 gcaatcttctc 119  Q
    |||||||||||    
T  3712066 gcaatcttctc 3712056  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 27879165 - 27879051
Alignment:
Q  163 tttgtctactttttgtaaattaacaagataattaagccactggtatatgaaaatcgtctatgagaaagaa-aaaataaaagtataaattgcaacaaaaag 261  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  27879165 tttgtccactttttgtaaattaacaacataattaagccactggtatatgaaaatcgtctctgagaaagaaaaaaataaaagtatgaattgcaacaaaaag 27879066  T
Q  262 tttaaacaagactaa 276  Q
    |||||||||||||||    
T  27879065 tttaaacaagactaa 27879051  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 27879332 - 27879224
Alignment:
Q  9 agcagagagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagattcaaatattgcgggtcccacagcttttt 108  Q
    |||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||    
T  27879332 agcaaagagagaagttgaagagagatgttgtacttctcttgtttggtgtgcaaagaaata--tgagagagatccaaatattgcgggtcccacagcttttt 27879235  T
Q  109 gcaatcttctc 119  Q
    |||||||||||    
T  27879234 gcaatcttctc 27879224  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 9200953 - 9200843
Alignment:
Q  9 agcagagagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagattcaaatattgcgggtcccacagcttttt 108  Q
    |||| |||||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||| | |||| || ||||||||| |||||||||| ||||||    
T  9200953 agcaaagagagaagttgaagagagatgttgtatttctcttatttggtgtgcataaaaataggggggagaaatccaaatattgtgggtcccacaacttttt 9200854  T
Q  109 gcaatcttctc 119  Q
    |||||||||||    
T  9200853 gcaatcttctc 9200843  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 44062848 - 44062743
Alignment:
Q  14 agagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagattcaaatattgcgggtcccacagctttttgcaat 113  Q
    |||||||||||||||||| ||| || ||||||||||||||||| ||| ||||||||| ||||||||| ||| || || |||||||||| |||||| ||||    
T  44062848 agagagaaattgaagagagatgctgcatttctcttgtttggtgagcatagaaataggtgagagagatccaattactgtgggtcccacaactttttacaat 44062749  T
Q  114 cttctc 119  Q
     |||||    
T  44062748 gttctc 44062743  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33484248 - 33484287
Alignment:
Q  16 agagaaattgaagagaaatgttgtatttctcttgtttggt 55  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  33484248 agagaagttgaagagaaatgttgaatttctcttgtttggt 33484287  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 43637678 - 43637734
Alignment:
Q  23 ttgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagaga 79  Q
    |||||||||||||||| |||| ||||||||||| ||   ||||||||| ||||||||    
T  43637678 ttgaagagaaatgttgaatttttcttgtttggtttgattagaaataggggagagaga 43637734  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 37631158 - 37631048
Alignment:
Q  9 agcagagagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagattcaaatattgcgggtcccacagcttttt 108  Q
    |||| |||||||| ||||||||| | ||   ||||||||||||||||||||| ||||||||||||||||||| ||||| |   |||||||| |  |||||    
T  37631158 agcaaagagagaagttgaagagatacgtcccatttctcttgtttggtgtgcatagaaataggagagagagatccaaatttaatgggtcccataatttttt 37631059  T
Q  109 gcaatcttctc 119  Q
    |||||||||||    
T  37631058 gcaatcttctc 37631048  T

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Target: scaffold0143 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 2430 - 2394
Alignment:
Q  16 agagaaattgaagagaaatgttgtatttctcttgttt 52  Q
    |||||| |||||||||||||||| |||||||||||||    
T  2430 agagaagttgaagagaaatgttgaatttctcttgttt 2394  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 29964020 - 29964088
Alignment:
Q  13 gagagagaaattgaagagaaatgttgtatttctcttgtttggtgtgcaaagaaataggagagagagatt 81  Q
    ||||||||| ||| |||||||  ||| |||||||||||||||| ||  | |||||||| ||||||||||    
T  29964020 gagagagaagttggagagaaagattgcatttctcttgtttggtttgacatgaaataggggagagagatt 29964088  T

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