View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12352_low_8 (Length: 255)
Name: NF12352_low_8
Description: NF12352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12352_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 53024396 - 53024222
Alignment:
| Q |
1 |
cttgttttatccacagacgaaggttcctctccttttatatcatggttcctcagttgcagacatttcttctcgtatgcaagtcgaacacgtgttcctgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53024396 |
cttgttttatccacagacgaaggttcctctccttttatatcatggttcctcagttgcagacatttcttctcgtatgcaagtcgaacacgtgttcctgact |
53024297 |
T |
|
| Q |
101 |
gttgaaaaagaaggtgagcatagcattaagttttctattattacagtatgaaatcataagcacgataatgacctg |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53024296 |
gttgaaaaagaaggtgagcatagcattaagttttctattattatagtatgaaatcataagcacgataatgacctg |
53024222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University