View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_high_4 (Length: 454)
Name: NF12354_high_4
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 53079073 - 53078806
Alignment:
| Q |
19 |
tgctgacataatgttaggtttgttacccctctttttgtagagtgcaaaattgaaccaaaataaaaggggttggttcatgatgaatacaaaagcttaaaat |
118 |
Q |
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| T |
53079073 |
tgctgacataatgttaggtttgttacccctctttttgtagagtgcaaaattgaaccaaaataaaaggggttggttcatgatgaatacagaagcttaaaat |
53078974 |
T |
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| Q |
119 |
tgttatcctataatatcatactgcagttgagaaaacgcgattaattttgggttttctatggtaaacaatggaattatttgaaattgaattgggacgaagt |
218 |
Q |
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| T |
53078973 |
tggtatcctataatatcatactgcagttgagaaaacgcgattaattttgggttttctatggtaaacaatggaattatttgaaattgaattgggacgaagt |
53078874 |
T |
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| Q |
219 |
aacacaattagcaactaaacagataatcggtttcgaatatgaaactaataaaagggggattgaattta |
286 |
Q |
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| T |
53078873 |
aacacaattagcaactaaacagataatcggtttcgaatatgaaactaataaaagggggattgaattta |
53078806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 53078735 - 53078657
Alignment:
| Q |
357 |
gggaagtgttgattggaaaggataagtgnnnnnnngggttcagttgagcttcggtgatgacatagagggaaatcaacgg |
435 |
Q |
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| T |
53078735 |
gggaagtgttgattggaaaggataagtgtttttttgggttcagttgagcttcggtgatgacatagagggaaatcaacgg |
53078657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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