View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12354_high_7 (Length: 392)
Name: NF12354_high_7
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 380
Target Start/End: Complemental strand, 45205993 - 45205639
Alignment:
| Q |
24 |
cacaggacatgtgtttttattgatttttaattcaaagaatt-aacaatatcggggataaaagtgatagtttgtacatcattgaaatatgtgtaatttaca |
122 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45205993 |
cacaggacatgtgtttt-attgatttctaattcaaagaatttaacaatatcagggataaaagtgatagtttgtacatcactgaaatatgtgtaatttaca |
45205895 |
T |
|
| Q |
123 |
cttctgatccatctcaatcaacttatgtaacacatcaagtaactattttactgnnnnnnngtttgttgagaatttgactgtatcttttaatacataggat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45205894 |
cttctgatccatctcaatcaacttatgtaacacatcaagtaactattttactgtttttt--tttgttgagaattttactgtatcttttaatacataggat |
45205797 |
T |
|
| Q |
223 |
gagaagaagcaatatttctgattttatttatgaattattgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaac |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45205796 |
gagaagaagcaatatttctgattttatttatgaattattgtaattacgcaggtcattttctcttgacaaatcttttgttggatactatgaagaaaacaac |
45205697 |
T |
|
| Q |
323 |
acgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggctcacaggttc |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45205696 |
acgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggctcataggttc |
45205639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 45247389 - 45247291
Alignment:
| Q |
261 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
359 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| || ||||| |||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
45247389 |
tgtaattgtgcaggtcattttctcttgacaaatcttttgttggacacaatgaaaaaaacagcacaccaaagtaagaaagaaggaagaattgttaatgtc |
45247291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 45231554 - 45231456
Alignment:
| Q |
261 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
359 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||||||| || |||||||||||| ||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
45231554 |
tgtaattgtacaggtcattttctcttgacaaatcttttgttggacacaatgaagaaaacagcacaccaaagtaaaaaagaaggaagaattgttaatgtc |
45231456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 45212608 - 45212504
Alignment:
| Q |
271 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggc |
370 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||| | | ||||||||| ||||||||||||||||||||| ||||||| || |
|
|
| T |
45212608 |
caggtcattttctcttgacaaatcttttgttggacactatgaagaaaacagctagtgaaagtaagactgaaggaagaattgttaatgtctcctcagaagc |
45212509 |
T |
|
| Q |
371 |
tcaca |
375 |
Q |
| |
|
||||| |
|
|
| T |
45212508 |
tcaca |
45212504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 19277506 - 19277418
Alignment:
| Q |
271 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
359 |
Q |
| |
|
||||||||||||| || ||||| |||||||| || ||||||||||||||| || |||| |||||||||||||||||| |||||||| |
|
|
| T |
19277506 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagcaaatgaaagcaagaaagaaggaagaattattaatgtc |
19277418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 19294937 - 19294849
Alignment:
| Q |
271 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
359 |
Q |
| |
|
||||||||||||| || ||||| |||||||| || ||||||||||||||| | |||| |||||||||||||||||| ||| |||| |
|
|
| T |
19294937 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagctaatgaaagcaagaaagaaggaagaattattattgtc |
19294849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University