View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_high_8 (Length: 389)
Name: NF12354_high_8
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 40099888 - 40100266
Alignment:
| Q |
3 |
ccaacaaatttaaatatcaacaccagaaatagttttaaataacgcatgatctattcaatattcataccaaattttttccattgctacattttagaagaaa |
102 |
Q |
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||||||||||||| | ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40099888 |
ccaacaaatttaattttcaacacaagaaatagttttaaataacacattatctattcaatattcataccaaattttttccattgctacaatttagaagaaa |
40099987 |
T |
|
| Q |
103 |
ttaactctcaattttttg-atgtaggggtctaccattatggttacatgatgttcctggaattgtatttagaactgataatgatcaatttaaggtaccaat |
201 |
Q |
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| T |
40099988 |
ttaactctcaattttttttatgtaggggtctaccattatggttacatgatgttcctggaattgtatttagaactgataatgatcaatttaaggtaccaat |
40100087 |
T |
|
| Q |
202 |
ataacttttattttccttccatccattcaatttttgacactacgtaatagattattcataaactaaccttttcttaatgacagtttcacatgcaaagatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40100088 |
ataacttttattttccttccatccattcaatttttgacactacgtaatagattattcataaactaaccttttcttaatgacagtttcacatgcaaagatt |
40100187 |
T |
|
| Q |
302 |
cactaccaaaatagtcaacatgatgaaatcagccaatctttttgcttcacaaggaggacctatcatactatcacaggtt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40100188 |
cactaccaaaatagtcaacatgatgaaatcagccaatctttttgcttcacaaggaggacctatcatactatcccaggtt |
40100266 |
T |
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