View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_1 (Length: 764)
Name: NF12354_low_1
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 24 - 757
Target Start/End: Original strand, 40960393 - 40961126
Alignment:
| Q |
24 |
cccaaaaacaaactccaagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaag |
123 |
Q |
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| T |
40960393 |
cccaaaaacaaactccaagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaag |
40960492 |
T |
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| Q |
124 |
tgttggatagaagtagtaaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960493 |
tgttggatagaagtagtaaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtac |
40960592 |
T |
|
| Q |
224 |
cgcaaaaatgctagatgttttcgaaagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttg |
323 |
Q |
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| T |
40960593 |
cgcaaaaatgctagatgttttcgaaagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttg |
40960692 |
T |
|
| Q |
324 |
attccgtggttgtttactaaatatttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcac |
423 |
Q |
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| T |
40960693 |
attccgtggttgtttactaaatatttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcac |
40960792 |
T |
|
| Q |
424 |
tttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgcta |
523 |
Q |
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| T |
40960793 |
tttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgcta |
40960892 |
T |
|
| Q |
524 |
gttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgata |
623 |
Q |
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| T |
40960893 |
gttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgtgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgata |
40960992 |
T |
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| Q |
624 |
tttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattc |
723 |
Q |
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| T |
40960993 |
tttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattc |
40961092 |
T |
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| Q |
724 |
ttggtctgcttcttgtgatgcggtgtctgtgctg |
757 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
40961093 |
ttggtctgcctcttgtgatgcggtgtctgtgctg |
40961126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 324 - 756
Target Start/End: Original strand, 40947504 - 40947931
Alignment:
| Q |
324 |
attccgtggttgtttactaaatatttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcac |
423 |
Q |
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|||| |||||| |||||| ||||||| | ||||||| |||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||| |
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| T |
40947504 |
attctgtggttatttactggatatttgaattccaggagggtttgactgctgaggaaatatccaaggatgagcccgatgagccacaacacatgcaggtcac |
40947603 |
T |
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| Q |
424 |
tttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttct-gtgaaacagatgacagatgct |
522 |
Q |
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| T |
40947604 |
tttttgctccatcccaacaattttatgttatctgttaaattgtgtgaatattatttactgaatgttggcttttctactggtgaaacagatgacagatgct |
40947703 |
T |
|
| Q |
523 |
agttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgat |
622 |
Q |
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| T |
40947704 |
cgctgcaaaatttgcgatgagcaaaaagttggcgtgagggatattatccgtgcaggatatgctgaccgatatatggtcagcgccttaatgctttactgat |
40947803 |
T |
|
| Q |
623 |
atttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcatt |
722 |
Q |
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| T |
40947804 |
atttca--aatat---caaattcatctcctgtagtttttgtgacttcgg-tttaatttttgctctgcttgttcagctggaatgcatagcttgtggtcatt |
40947897 |
T |
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| Q |
723 |
cttggtctgcttcttgtgatgcggtgtctgtgct |
756 |
Q |
| |
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| T |
40947898 |
cctggtctgcctctcgtgatgcggtgtctgtgct |
40947931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 2663057 - 2662996
Alignment:
| Q |
356 |
caggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgca |
417 |
Q |
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||||| |||||||||||||||||| | ||||||| ||||| ||||| ||||||||||||| |
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| T |
2663057 |
caggagggtttgactgctgaggaaaaaaccaagaaggagcctgatgagaaacaacacatgca |
2662996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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