View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12354_low_10 (Length: 361)

Name: NF12354_low_10
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12354_low_10
NF12354_low_10
[»] chr5 (19 HSPs)
chr5 (18-346)||(36445399-36445727)
chr5 (18-346)||(36435499-36435806)
chr5 (18-155)||(36467868-36468005)
chr5 (152-346)||(36467978-36468160)
chr5 (268-342)||(36492969-36493043)
chr5 (23-143)||(36411144-36411260)
chr5 (172-253)||(36435962-36436043)
chr5 (168-232)||(36435880-36435944)
chr5 (169-262)||(36435980-36436073)
chr5 (273-314)||(36476148-36476189)
chr5 (168-211)||(36445822-36445865)
chr5 (184-262)||(36435875-36435953)
chr5 (274-314)||(36493164-36493204)
chr5 (168-211)||(36468228-36468271)
chr5 (184-253)||(36435953-36436022)
chr5 (168-205)||(36475908-36475945)
chr5 (160-200)||(36411253-36411293)
chr5 (168-232)||(36436000-36436064)
chr5 (225-281)||(36475995-36476051)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 36445399 - 36445727
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36445399 acacacaacattatttttattcatgaaatatattactgagaaagagtgcatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36445498  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 217  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445499 gtttgctcggcaccgtgaccaccgtgaccacctccaccgtgtcctccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 36445598  T
Q  218 ctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36445599 ctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttggcatcatttacttcattagtcttttcctc 36445698  T
Q  318 agtttgcgcggcaacagattcagcagcac 346  Q
    ||||||| |||||||||||||||||||||    
T  36445699 agtttgcacggcaacagattcagcagcac 36445727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 36435499 - 36435806
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36435499 acacacaacattatttttattcatgaaatatattactgagaaagagtacatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36435598  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 217  Q
    |||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435599 gtttgctcggcaccgtgaccaccgtgaccacctccaccatgtcccccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 36435698  T
Q  218 ctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctc 317  Q
    ||||||||||||||||||||||||||||||||||                     ||||||||||||||| |||||||||||||||||||||||||||||    
T  36435699 ctccatggttgtaactacctccaccatggttgta---------------------accaccaccatatttggcatcatttacttcattagtcttttcctc 36435777  T
Q  318 agtttgcgcggcaacagattcagcagcac 346  Q
    ||||||| |||||||||||||||||||||    
T  36435778 agtttgcacggcaacagattcagcagcac 36435806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 36467868 - 36468005
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36467868 acacacaacattatttttattcatgaaatatattactgagaaagagtgcatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36467967  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccacc 155  Q
    ||||||||||||||||||| |||||| || ||||||||    
T  36467968 gtttgctcggcaccgtgactaccgtgtccacctccacc 36468005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 346
Target Start/End: Original strand, 36467978 - 36468160
Alignment:
Q  152 caccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgta 251  Q
    ||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| | |||| |    
T  36467978 caccgtgactaccgtgtccacctccaccatggttgtaaccacctcaaccgtggtggtaactacctcgtccatggttgtaactagctccacctttgttgaa 36468077  T
Q  252 acttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagcagcac 346  Q
    ||| |||||             |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36468078 actaccacc------------tccaccaccatttctggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagcagcac 36468160  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 36492969 - 36493043
Alignment:
Q  268 taactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagca 342  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  36492969 taaccaccaccaccatatttggcatcatttacttcattagtcttttcctcagtttggacggcaacaaattcagca 36493043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 36411144 - 36411260
Alignment:
Q  23 caacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctcagtttg 122  Q
    |||||||||||||||||||||||||||||||| ||| ||| || ||| |||||||     |||||||||| ||| ||||| |||||| |||||||||||     
T  36411144 caacattatttttattcatgaaatatattactaagaaagagtgtatggtgcatga----tgatatcattacgattagtttcgagtttcgtcctcagtttc 36411239  T
Q  123 ctcggcaccgtgaccaccgtg 143  Q
    | ||||||| |||||||||||    
T  36411240 cacggcaccatgaccaccgtg 36411260  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36435962 - 36436043
Alignment:
Q  172 cctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 253  Q
    |||||||| |||||||| ||||||||||||| || ||||| ||| || ||||||||||||| ||||||||| | ||||||||    
T  36435962 cctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaac 36436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36435880 - 36435944
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 232  Q
    ||||||||| || ||||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  36435880 accacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaac 36435944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 36435980 - 36436073
Alignment:
Q  169 ccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 262  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||| |||||| || | |||||||| ||| || || ||||| |||| ||||||||    
T  36435980 ccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataacctccaccat 36436073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 36476148 - 36476189
Alignment:
Q  273 accaccaccatatttagcatcatttacttcattagtcttttc 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  36476148 accaccaccatatttggcatcatttacttcattagtcttttc 36476189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 36445822 - 36445865
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 211  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  36445822 accacctccaccatggttgtaaccacctccaccgttgtggtaac 36445865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 36435875 - 36435953
Alignment:
Q  184 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 262  Q
    |||||||||||||| || |||| ||||| |||||| || |||||||||| |||||| || ||||||||||  |||||||    
T  36435875 ttgtaaccacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaaccaccaccat 36435953  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 36493164 - 36493204
Alignment:
Q  274 ccaccaccatatttagcatcatttacttcattagtcttttc 314  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  36493164 ccaccaccatatttggcatcgtttacttcattagtcttttc 36493204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 36468228 - 36468271
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 211  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  36468228 accacctccaccgttgtggtaaccacctccaccgttgtggtaac 36468271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 36435953 - 36436022
Alignment:
Q  184 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 253  Q
    |||||||| |||||||| |||| ||| | |||||| || | |||||||| ||| ||||||||||||||||    
T  36435953 ttgtaacctcctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaac 36436022  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 36475908 - 36475945
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggt 205  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  36475908 accacctccaccgtggttgtaaccgcctccaccatggt 36475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 36411253 - 36411293
Alignment:
Q  160 ccaccgtgaccacctccaccgtggttgtaaccacctccacc 200  Q
    ||||||||||||| || ||||||||||| ||||||||||||    
T  36411253 ccaccgtgaccacgtctaccgtggttgtgaccacctccacc 36411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36436000 - 36436064
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 232  Q
    |||||| ||||| |||||||||||||||||||||| || ||||| ||| || || ||||| ||||    
T  36436000 accaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataac 36436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 36475995 - 36476051
Alignment:
Q  225 gttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccacc 281  Q
    |||||||| |||||||||||||||||| |  ||||||| |||||| | |||||||||    
T  36475995 gttgtaaccacctccaccatggttgtatccaccaccattgttgtatccaccaccacc 36476051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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