View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12354_low_11 (Length: 331)

Name: NF12354_low_11
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12354_low_11
NF12354_low_11
[»] chr5 (21 HSPs)
chr5 (18-315)||(36445399-36445696)
chr5 (18-262)||(36435499-36435743)
chr5 (18-155)||(36467868-36468005)
chr5 (152-260)||(36467978-36468086)
chr5 (23-143)||(36411144-36411260)
chr5 (172-253)||(36435962-36436043)
chr5 (168-232)||(36435880-36435944)
chr5 (268-315)||(36492969-36493016)
chr5 (273-315)||(36435733-36435775)
chr5 (169-262)||(36435980-36436073)
chr5 (273-314)||(36476148-36476189)
chr5 (168-211)||(36445822-36445865)
chr5 (184-262)||(36435875-36435953)
chr5 (274-314)||(36493164-36493204)
chr5 (168-211)||(36468228-36468271)
chr5 (184-253)||(36435953-36436022)
chr5 (274-315)||(36468088-36468129)
chr5 (168-205)||(36475908-36475945)
chr5 (160-200)||(36411253-36411293)
chr5 (168-232)||(36436000-36436064)
chr5 (225-281)||(36475995-36476051)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 36445399 - 36445696
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36445399 acacacaacattatttttattcatgaaatatattactgagaaagagtgcatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36445498  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 217  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445499 gtttgctcggcaccgtgaccaccgtgaccacctccaccgtgtcctccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 36445598  T
Q  218 ctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36445599 ctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttggcatcatttacttcattagtcttttcc 36445696  T

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Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 36435499 - 36435743
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36435499 acacacaacattatttttattcatgaaatatattactgagaaagagtacatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36435598  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 217  Q
    |||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435599 gtttgctcggcaccgtgaccaccgtgaccacctccaccatgtcccccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctc 36435698  T
Q  218 ctccatggttgtaactacctccaccatggttgtaacttccaccat 262  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  36435699 ctccatggttgtaactacctccaccatggttgtaaccaccaccat 36435743  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 36467868 - 36468005
Alignment:
Q  18 acacacaacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36467868 acacacaacattatttttattcatgaaatatattactgagaaagagtgcatggtgcatgaagatagatatcattatgatcagttttgagttttgtcctca 36467967  T
Q  118 gtttgctcggcaccgtgaccaccgtggcctcctccacc 155  Q
    ||||||||||||||||||| |||||| || ||||||||    
T  36467968 gtttgctcggcaccgtgactaccgtgtccacctccacc 36468005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 36467978 - 36468086
Alignment:
Q  152 caccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgta 251  Q
    ||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| | |||| |    
T  36467978 caccgtgactaccgtgtccacctccaccatggttgtaaccacctcaaccgtggtggtaactacctcgtccatggttgtaactagctccacctttgttgaa 36468077  T
Q  252 acttccacc 260  Q
    ||| |||||    
T  36468078 actaccacc 36468086  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 36411144 - 36411260
Alignment:
Q  23 caacattatttttattcatgaaatatattactgagagagaatgcatgatgcatgaagatagatatcattatgatcagttttgagttttgtcctcagtttg 122  Q
    |||||||||||||||||||||||||||||||| ||| ||| || ||| |||||||     |||||||||| ||| ||||| |||||| |||||||||||     
T  36411144 caacattatttttattcatgaaatatattactaagaaagagtgtatggtgcatga----tgatatcattacgattagtttcgagtttcgtcctcagtttc 36411239  T
Q  123 ctcggcaccgtgaccaccgtg 143  Q
    | ||||||| |||||||||||    
T  36411240 cacggcaccatgaccaccgtg 36411260  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36435962 - 36436043
Alignment:
Q  172 cctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 253  Q
    |||||||| |||||||| ||||||||||||| || ||||| ||| || ||||||||||||| ||||||||| | ||||||||    
T  36435962 cctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaac 36436043  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36435880 - 36435944
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 232  Q
    ||||||||| || ||||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  36435880 accacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaac 36435944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 36492969 - 36493016
Alignment:
Q  268 taactaccaccaccatatttagcatcatttacttcattagtcttttcc 315  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  36492969 taaccaccaccaccatatttggcatcatttacttcattagtcttttcc 36493016  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 36435733 - 36435775
Alignment:
Q  273 accaccaccatatttagcatcatttacttcattagtcttttcc 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  36435733 accaccaccatatttggcatcatttacttcattagtcttttcc 36435775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 36435980 - 36436073
Alignment:
Q  169 ccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 262  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||| |||||| || | |||||||| ||| || || ||||| |||| ||||||||    
T  36435980 ccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataacctccaccat 36436073  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 36476148 - 36476189
Alignment:
Q  273 accaccaccatatttagcatcatttacttcattagtcttttc 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  36476148 accaccaccatatttggcatcatttacttcattagtcttttc 36476189  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 36445822 - 36445865
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 211  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  36445822 accacctccaccatggttgtaaccacctccaccgttgtggtaac 36445865  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 36435875 - 36435953
Alignment:
Q  184 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 262  Q
    |||||||||||||| || |||| ||||| |||||| || |||||||||| |||||| || ||||||||||  |||||||    
T  36435875 ttgtaaccacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaaccaccaccat 36435953  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 36493164 - 36493204
Alignment:
Q  274 ccaccaccatatttagcatcatttacttcattagtcttttc 314  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  36493164 ccaccaccatatttggcatcgtttacttcattagtcttttc 36493204  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 36468228 - 36468271
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 211  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  36468228 accacctccaccgttgtggtaaccacctccaccgttgtggtaac 36468271  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 36435953 - 36436022
Alignment:
Q  184 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 253  Q
    |||||||| |||||||| |||| ||| | |||||| || | |||||||| ||| ||||||||||||||||    
T  36435953 ttgtaacctcctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaac 36436022  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 36468088 - 36468129
Alignment:
Q  274 ccaccaccatatttagcatcatttacttcattagtcttttcc 315  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  36468088 ccaccaccatttctggcatcatttacttcattagtcttttcc 36468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 36475908 - 36475945
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggt 205  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  36475908 accacctccaccgtggttgtaaccgcctccaccatggt 36475945  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 36411253 - 36411293
Alignment:
Q  160 ccaccgtgaccacctccaccgtggttgtaaccacctccacc 200  Q
    ||||||||||||| || ||||||||||| ||||||||||||    
T  36411253 ccaccgtgaccacgtctaccgtggttgtgaccacctccacc 36411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 36436000 - 36436064
Alignment:
Q  168 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 232  Q
    |||||| ||||| |||||||||||||||||||||| || ||||| ||| || || ||||| ||||    
T  36436000 accaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataac 36436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 36475995 - 36476051
Alignment:
Q  225 gttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccacc 281  Q
    |||||||| |||||||||||||||||| |  ||||||| |||||| | |||||||||    
T  36475995 gttgtaaccacctccaccatggttgtatccaccaccattgttgtatccaccaccacc 36476051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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