View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_12 (Length: 282)
Name: NF12354_low_12
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 21113956 - 21113749
Alignment:
| Q |
48 |
tagcgcgttaaggagctgctgcctcctcttgttgttttttggtctagcggtgctggctgttcactggcagcgctgctgtcatgacagtccagcaccagtt |
147 |
Q |
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| T |
21113956 |
tagcacgttaaggagctgctgcctcctcttgttgttttttggtctagcggtgctggctgttcactggcagcgctgctgtcatgacagtccagcaccagtt |
21113857 |
T |
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| Q |
148 |
gctgtgttgtgtagcctgttttgtgaagtaggtatggggtcttttgtggcaattttgctgggctgttggagggggtgctatggggttgaattttggtggt |
247 |
Q |
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| T |
21113856 |
gctgtgttgtgtagcctgttttgtgaggtaggtctggggtcttttgtggcaactttgctgggctgttggaggcggtgctatggggttgaattttggtggt |
21113757 |
T |
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| Q |
248 |
ttgaaatt |
255 |
Q |
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|||||||| |
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| T |
21113756 |
ttgaaatt |
21113749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 1160749 - 1161007
Alignment:
| Q |
7 |
gtgtatgttttatgagtggagttggagtccacataattgcttagcgcgttaaggagctgctgcctcctcttgttgttttttggtctagcggtgctggctg |
106 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||| |||| |||||||||| || |||| |||||| |
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| T |
1160749 |
gtgtatgttttatgagtggagttggagtccgcgggattgcttagcacgttaatgagctgctgcctccttttgt--ttttttggtccagtggtgttggctg |
1160846 |
T |
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| Q |
107 |
ttcactggcagcgctgctgtcatgacagtccagcaccagttgctgtgttgtgtagcctgttttgtgaagtaggtatggggtcttttgtggcaattttgct |
206 |
Q |
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| T |
1160847 |
ctcactggcagcgatgctgtcatgacagtccagcaagttttgttgtgtcgtgtagccggttttttgaggaaggtctggcctctttggtggcagctttgct |
1160946 |
T |
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| Q |
207 |
gggctgttggagggggtgctatggggttgaattttggtggtttgaaattggatttcagagc |
267 |
Q |
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| T |
1160947 |
ggtctattggaggcggtgctaaggggttgaattttgatggttcataattggatttcagagc |
1161007 |
T |
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