View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_14 (Length: 245)
Name: NF12354_low_14
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39487782 - 39487546
Alignment:
| Q |
1 |
accaatcgaccagctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39487782 |
accaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaa |
39487683 |
T |
|
| Q |
101 |
catgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaa |
200 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487682 |
catgatctggcaaagtacatactcttgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaa |
39487583 |
T |
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| Q |
201 |
aatcactgaagcctccgaagccaagtcctcctatgct |
237 |
Q |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
39487582 |
aatcactgaagcctctgaagccaagtcctcctttgct |
39487546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 5807074 - 5807160
Alignment:
| Q |
94 |
caaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgctt |
180 |
Q |
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|||||||| || ||| | ||||||||||||||| ||||||| |||||||| |||||||| ||| ||| || ||||| |||||||| |
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| T |
5807074 |
caaaaaacttgttctcggaaagtacctactcttaaacacccatgaaaggagagagtgttcattggacatcagccgccaccattgctt |
5807160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46033905 - 46033669
Alignment:
| Q |
1 |
accaatcgaccagctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaa |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46033905 |
accaatcgaccatctccatccgagatcaattacagatttagcattcatcaaactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaa |
46033806 |
T |
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| Q |
101 |
catgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46033805 |
catgatctggcaaagtacctactcttgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaa |
46033706 |
T |
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| Q |
201 |
aatcactgaagcctccgaagccaagtcctcctatgct |
237 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
46033705 |
aatcactgaagcctctgaagccaagtcctcctttgct |
46033669 |
T |
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