View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_2 (Length: 488)
Name: NF12354_low_2
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 20692310 - 20692761
Alignment:
| Q |
19 |
ggtttggttttaatttaagtgttgactttagttttttattgatgatagtggtagtcctcagttagatggtgtatatattagtgtttttatgttccgtcta |
118 |
Q |
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| T |
20692310 |
ggtttggttttgatttaagtgttgactttagttttttattgatgttagaggtagtcctcagttagatggtgtatatattagtgtttttatgttccgtcta |
20692409 |
T |
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| Q |
119 |
tatacatcgtatttgttttgtcatttctctctctcgatccctcttcgtcttatgcagagacttctataatttgttcactcttaaacctcacttatactca |
218 |
Q |
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| T |
20692410 |
tatacatcgtatttgttttatcatttttctttgtcgatctctcttcatcttgtgcagagactgctataatttgttcactcttaaacctcacttatactca |
20692509 |
T |
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| Q |
219 |
agtctaataatcttggattggtcctgactttactatatttctaatctatatcaaattttgtcaatataacgaaagttaacannnnnnnnnataccaatga |
318 |
Q |
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| T |
20692510 |
agtctaataatcttggattggtcctgactttactatatttctaatctaaatcaaattttgtccatataacgaaagttaacattttttgttataccgatga |
20692609 |
T |
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| Q |
319 |
agttaacactgttacattagtaaatgtnnnnnnnnnnnnnnnnnnnnnnnncaacttttttaaatatcctgtcttaaaaagacataattgtctaacaacc |
418 |
Q |
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| T |
20692610 |
agttaacactgttacattagtaaatgtgaaaaaagataaagaagagaaaaacaacttttttaaatatcttgtcttaaagagacataatggtctaacaacc |
20692709 |
T |
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| Q |
419 |
ctctttacatcgatgccatggaaagcctgtgaaaaaagtgatacatggcacct |
471 |
Q |
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| T |
20692710 |
ctctttacatcgatgccatggaaagcctgtg-aaaaagtgatacatggcacct |
20692761 |
T |
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