View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_3 (Length: 480)
Name: NF12354_low_3
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 41675282 - 41675516
Alignment:
| Q |
18 |
aatgcaatcttcaaagaagcttctcacagaaaaacccttcttcaataggtcgaaaatgcaccaatttagctaaggaacagaaagcaagattttacataat |
117 |
Q |
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| T |
41675282 |
aatgcaatcttcaaagaagcttctcacagaaaaacccttcttcaataggtcgaaaatgcaccaatttagctaaggaacagaaagcaagattttacataat |
41675381 |
T |
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| Q |
118 |
gagaaggtgtgttgccatgttagtttgttggcataaacatggagataattagcataggctagagaagaacatgtctattgcaatattgcatggattcatt |
217 |
Q |
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| T |
41675382 |
gagaaggtgtgttgccatgttagtttgttggcataaacatggagataattagcataggctagagaagaacatgtctattgcaatattgcatggattcatt |
41675481 |
T |
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| Q |
218 |
gtttagatttcacatgtattgttgcatcttggaca |
252 |
Q |
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| T |
41675482 |
gtttagatttcacatgtattgttgcatcttggaca |
41675516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 319 - 473
Target Start/End: Original strand, 41675583 - 41675737
Alignment:
| Q |
319 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
418 |
Q |
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| T |
41675583 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
41675682 |
T |
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| Q |
419 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtg |
473 |
Q |
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| T |
41675683 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtg |
41675737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 24067124 - 24067216
Alignment:
| Q |
71 |
aaatgcaccaatttagctaaggaacagaaagcaagattttacataatgagaaggtgtgttgccatgttagtttgttggcataaacatggagat |
163 |
Q |
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| T |
24067124 |
aaatgcaccaatatagccaaagaacagaaagcaagattttacatcatgaggagatgcgtagccatgttagtttgttggcacaaacatggagat |
24067216 |
T |
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