View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12354_low_6 (Length: 399)
Name: NF12354_low_6
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 31264121 - 31264517
Alignment:
| Q |
1 |
attgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttctttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31264121 |
attgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttccttgaat |
31264220 |
T |
|
| Q |
101 |
tcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctga |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264221 |
tcagacttctgttgcgacaaatttgcatttgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctga |
31264320 |
T |
|
| Q |
201 |
tgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattc |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31264321 |
tgaacgttgttttggtcttctatggccatgttaacgtataattttcctaggacgtctagactcttacatgcagtattctcattctctatggtattcattc |
31264420 |
T |
|
| Q |
300 |
atgtttgggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccatttttg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31264421 |
atgtttgggactgagaattgttcgggtgggcatagaacatattgaaacatatttcgctccaatgcccacacttgacccatacactctaccatttttg |
31264517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 22049815 - 22049524
Alignment:
| Q |
103 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
202 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
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|
| T |
22049815 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
22049716 |
T |
|
| Q |
203 |
aacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattcat |
301 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||| |||| | ||||| | ||||| |||||||| ||||| ||| || ||||||||| | |||| ||||| |
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|
| T |
22049715 |
aacgttgttttggttttctttggccttgttggcgtaaagattgcccaagacgtgcagactcttccatgcggtattcccattctctacgatattggttcat |
22049616 |
T |
|
| Q |
302 |
gtttgggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccattt |
383 |
Q |
| |
|
||||| || ||||||| |||| |||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |
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|
| T |
22049615 |
gtttgcgaatgagaatcgttcttgtgggcatagacaatattaaaacatatttcgctcaaatgcccacactcgacccatacattctaccattt |
22049524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 22144715 - 22145101
Alignment:
| Q |
9 |
ccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaactttctttgaattcagact |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||||| || |||||||| | ||||||| |||| |
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|
| T |
22144715 |
ccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagatgctctattccacgtaattcaacttcccttgaatttagaca |
22144814 |
T |
|
| Q |
108 |
tctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatgaacgt |
207 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||| || |||||||| |||| | | |||| |||||||||||||||| |||||| || ||||||||||||| |
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|
| T |
22144815 |
tttgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttaatggccagttcgagcgactcatcactgtctcttgtgatttctgatgaacgt |
22144914 |
T |
|
| Q |
208 |
tgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattcatgtttg |
306 |
Q |
| |
|
||||| |||||||| ||||| |||| ||||| | ||||||| ||||| |||||||| ||||| ||| || || |||||| | |||| |||||||||| |
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|
| T |
22144915 |
tgttttggtcttctttggccttgttgacgtaaagattgcctaagacgtgcagactcttccatgcggtattcccactctctacgatattggttcatgtttg |
22145014 |
T |
|
| Q |
307 |
ggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccattt |
383 |
Q |
| |
|
|| ||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
22145015 |
cgagtgagaatcgttcttgtgggcatagacaatattgaaacatatttcgctccaatgcccacactcgacccatgcattctaccattt |
22145101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 12212524 - 12212918
Alignment:
| Q |
1 |
attgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaactttctttgaa |
99 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| ||||||||||||||||||| || |||||||| | ||||| |
|
|
| T |
12212524 |
attgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagatgctctattccacgtaattcaacttcccttgaa |
12212623 |
T |
|
| Q |
100 |
ttcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctg |
199 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||| |||||| || ||||||||||||| | | |||| ||||||||||| || | |||||| || ||||| |
|
|
| T |
12212624 |
tttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatattaatggccagttcgagcgactcattaccgtctcttgtgatttctg |
12212723 |
T |
|
| Q |
200 |
atgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcatt |
298 |
Q |
| |
|
|||||| |||||| ||||| || ||||| |||| | ||| | || |||| ||||| |||||||| ||||| ||| || ||||||||| | |||| || |
|
|
| T |
12212724 |
atgaacattgttttggtctactttggccttgttgaggtaaagatttcctaagacgtgcagactcttccatgcggtattcccattctctacgatattggtt |
12212823 |
T |
|
| Q |
299 |
catgtttgggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccattt |
383 |
Q |
| |
|
|||||||| || ||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
12212824 |
catgtttgcgagtgagaatcgttcttgtgggcatagacaatattgaaacatatttcgctccaatgcccacactcgacccatacattctaccattt |
12212918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 13815065 - 13814674
Alignment:
| Q |
3 |
tgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaactttctttgaatt |
101 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||||||||||||||| || |||||||| | ||||||| |
|
|
| T |
13815065 |
tgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggagatgctctattccacgtaattcaacttcccttgaatt |
13814966 |
T |
|
| Q |
102 |
cagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgat |
201 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | |||| ||||||||||| |||| |||||| || || | || |
|
|
| T |
13814965 |
tagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttagtggccagttcgagcgactcattactgtctcttgtga-tttttat |
13814867 |
T |
|
| Q |
202 |
gaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattca |
300 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| ||||| | ||||||| ||||| |||||||| |||| ||| || ||||||||| | |||| |||| |
|
|
| T |
13814866 |
gaacgttgttttggtcttctttggccttgttgacgtaaagattgcctaagacgtgcagactcttccatgtggtattcccattctctacgatattggttca |
13814767 |
T |
|
| Q |
301 |
tgtttgggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccattt |
383 |
Q |
| |
|
|||||| || ||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
13814766 |
tgtttgcgagtgagaatcgttcttgtgggcatagacaatattgaaacatatttcgctccaatgcccacactcgacccttacattctaccattt |
13814674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 44360200 - 44359909
Alignment:
| Q |
103 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
202 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
|
|
| T |
44360200 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
44360101 |
T |
|
| Q |
203 |
aacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattcat |
301 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||| |||| | ||||| | ||||| |||||||| ||||| ||| || ||||||||| | |||| ||||| |
|
|
| T |
44360100 |
aacgttgttttggttttctttggccttgttggcgtaaagattgcccaagacgtgcagactcttccatgcggtattcccattctctacgatattggttcat |
44360001 |
T |
|
| Q |
302 |
gtttgggactgagaattgttcgggtgggcatag----------aacatatttcgctccaatgcccacacttgacccatacactctaccattt |
383 |
Q |
| |
|
||||| || ||||||| |||| |||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
44360000 |
gtttgcgaatgagaatcgttcttgtgggcatagacaatattaaaacatatttcgctcaaatgcccacactcgacccatacattctaccattt |
44359909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 262
Target Start/End: Complemental strand, 15851109 - 15850956
Alignment:
| Q |
109 |
ctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatgaacgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||| | |||| ||||||||||| |||| || |||| |||||| ||||||||| |
|
|
| T |
15851109 |
ctgttgagacaaatttgcatctgattgttcttgttgtgtatgatgttaatggtgagttcgagcgactcattactgtcttttggaacttcttatgaacgtt |
15851010 |
T |
|
| Q |
209 |
gtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagact |
262 |
Q |
| |
|
|||| |||||||| ||||| |||| ||||| | ||| |||| ||||| |||||| |
|
|
| T |
15851009 |
gttttggtcttctttggccttgttgacgtaaagttttcctaagacgtgtagact |
15850956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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