View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12354_low_9 (Length: 368)
Name: NF12354_low_9
Description: NF12354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12354_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 30641659 - 30641879
Alignment:
| Q |
21 |
attactcttttaatggttaattcttgaaggttttgtgtttcaacaatggaagaagatcaagaaatgatgaaacatgtgtgcaaattctgcagaaaaagaa |
120 |
Q |
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| T |
30641659 |
attactcttttagtggttaattcttgaaggttttgtgtttcaacaatggaagaagatcaagaaatgatgaaacatgtgtgcaaattctgcagaaaaagaa |
30641758 |
T |
|
| Q |
121 |
gtgtgaaagttgagnnnnnnncattactctagagtaactaatgtcaatctttcatgaattctatcggtcttttttaattaattgatattcatcttcacct |
220 |
Q |
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| T |
30641759 |
gtgtgaaagttgagtttttttcattactctagagtaactaatgtcaatctttcatgaattctatcggtcttttttaatttattgatattcatcttcacct |
30641858 |
T |
|
| Q |
221 |
tgaacgtgtttagtttgctgg |
241 |
Q |
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||||||||||||||||||||| |
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| T |
30641859 |
tgaacgtgtttagtttgctgg |
30641879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 26365749 - 26365533
Alignment:
| Q |
26 |
tcttttaatggttaattcttgaaggttttgtgtttcaacaatggaagaagatcaagaaatgatgaaacatgtgtgcaaattctgcagaaaaagaagtgtg |
125 |
Q |
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| T |
26365749 |
tcttttagtggttaattcttgaaggttttgtgtttcaacaatggaagaagatcaagaaatgatgaaacatgtgtgcaaattctgcagaaaaagaagtgtg |
26365650 |
T |
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| Q |
126 |
aaagttgagnnnnnnncattactctagagtaactaatgtcaatctttcatgaattctatcggtcttttttaattaattgatattcatcttcaccttgaac |
225 |
Q |
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| T |
26365649 |
aaagttgagttttttacattactctacagtaactaatgtcaatctttcataaattctatcgatcttttttaatttattgttattcatcctcaccttgaac |
26365550 |
T |
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| Q |
226 |
gtgtttagtttgctggg |
242 |
Q |
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||||||||||||||||| |
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| T |
26365549 |
gtgtttagtttgctggg |
26365533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 30641929 - 30641992
Alignment:
| Q |
291 |
ataacagacagaattcgtgacattcattcgattctaggacaaatggatgaaatatgggagcaca |
354 |
Q |
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| T |
30641929 |
ataacagacagaattcgtgacattcattcgattccaggacaaatgggtgaaatatgagagcaca |
30641992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 26365488 - 26365425
Alignment:
| Q |
291 |
ataacagacagaattcgtgacattcattcgattctaggacaaatggatgaaatatgggagcaca |
354 |
Q |
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| T |
26365488 |
ataacagatagaattcgtgacattcattcaattccaggacaaatgggtgaaatatgagagcaca |
26365425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 7235008 - 7234902
Alignment:
| Q |
19 |
agattactcttttaatggttaattcttgaaggttttgtg-tttcaacaatggaagaagatcaagaaatga------tgaaacatgtgtgcaaattctgca |
111 |
Q |
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|||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
7235008 |
agattactcttttagtagttaattcttgaagtttttgtggtttcaacaatggaagaagatcaagaagtgatgaaattgaaacatgtgtgcaaattctgca |
7234909 |
T |
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| Q |
112 |
gaaaaag |
118 |
Q |
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||||||| |
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|
| T |
7234908 |
gaaaaag |
7234902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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