View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_high_4 (Length: 450)
Name: NF12355_high_4
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 27 - 450
Target Start/End: Original strand, 17724939 - 17725368
Alignment:
| Q |
27 |
gattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatactgttccctgatgaacctttgtttcgtattgctcctcgggtttttgga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17724939 |
gattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctcctcggatttttgga |
17725038 |
T |
|
| Q |
127 |
tccacttgctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggat |
226 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725039 |
tccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggat |
17725138 |
T |
|
| Q |
227 |
atcggtgttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttctttacgtcttccattgagtctgagtc |
326 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
17725139 |
atcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtcacattctttgaggatacacctttttttgcgtcttccattgagtctgagtc |
17725238 |
T |
|
| Q |
327 |
tatctctcaagtattaccaattcctttccttgtcccggtaattccacccac------gcctgtcattgatcagtcaactccatcctcttctacggaaccc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17725239 |
tatctctcaagtattaccaattcctttccttgtcccggtaattccacccacacctgtccctgtcattgatcagtcaactccatcctcttctacagaaccc |
17725338 |
T |
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| Q |
421 |
cctagtcctcctccacctccacctcctcca |
450 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17725339 |
cctagtcctcctccacctccacctcctcca |
17725368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 38504427 - 38504594
Alignment:
| Q |
136 |
tttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggatatcggtgtt |
235 |
Q |
| |
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|||||||||||||| ||||| ||| |||||||||| ||| || || | |||||||| ||| | |||||||| ||| ||||| || |||||||||| |
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| T |
38504427 |
tttgttcatgatctcactcctggtcgcgataaattgtctgcacgagctgtcaaatgtgtgtttttgggctattctagaacccaaaaggggtatcggtgtt |
38504526 |
T |
|
| Q |
236 |
attgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttcttt |
303 |
Q |
| |
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||| ||| || |||| ||| || || || || || ||||| || ||||| ||||||||||| |||||| |
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| T |
38504527 |
attctccatctacacgtcgcttttatatttcagcagatgttactttcttcgaggatacaccattcttt |
38504594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 13039536 - 13039957
Alignment:
| Q |
19 |
ggatacttgattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatactgttccctgatgaacctttgtttcgtattgctcctcggg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13039536 |
ggatacttgattaatagaatgccatcatctgtaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctcctcgga |
13039635 |
T |
|
| Q |
119 |
tttttggatccacttgctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13039636 |
tttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtaaaattaaatgtgtctttctaggctattcaagagttca |
13039735 |
T |
|
| Q |
219 |
aaaaggatatcggtgttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttctttacgtcttccattgag |
318 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13039736 |
aaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtcacattctttgaggatacatctttctttgcgtcttccattgag |
13039835 |
T |
|
| Q |
319 |
tctgagtctatctctcaagtattaccaattcctttccttgtcccggtaattccacccacgcctgtcattgatcagtcaactccatcctcttctacggaac |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13039836 |
tctgagtctatctctcaagtattaccaattcctttccttgttccggtaattccacccacgcc------tgatcagtcaactccatcctcttctacggaac |
13039929 |
T |
|
| Q |
419 |
cccctagtcctcctccacctccacctcc |
446 |
Q |
| |
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|||||||||||||||| ||||||||||| |
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| T |
13039930 |
cccctagtcctcctcctcctccacctcc |
13039957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 37918721 - 37918631
Alignment:
| Q |
213 |
agttcaaaaaggatatcggtgttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttcttt |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||||| || | ||||| ||||| || |||||||||||||||||||||||| |
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| T |
37918721 |
agttcaaaaagggtatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttactttctttgaggatacacctttcttt |
37918631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 33833058 - 33833148
Alignment:
| Q |
213 |
agttcaaaaaggatatcggtgttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttcttt |
303 |
Q |
| |
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|||||| ||||| |||||||||||||||| || ||||||||||| || | ||||| ||||| || ||| ||||| |||||||||||||| |
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| T |
33833058 |
agttcataaagggcatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttactttccttgagaatacacctttcttt |
33833148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 20705240 - 20705321
Alignment:
| Q |
91 |
gaacctttgtttcgtattgctcctcgggtttttggatccacttgctttgttcatgatcttactcccggtttagataaattgt |
172 |
Q |
| |
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||||||||||||| |||| ||| || ||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||| |
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| T |
20705240 |
gaacctttgtttcatattaatccacgtgtttttggaagtacttgttttgttcatgatctttttccaggtttagataagttgt |
20705321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 134 - 414
Target Start/End: Complemental strand, 11025985 - 11025705
Alignment:
| Q |
134 |
gctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggatatcggtg |
233 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||| || ||||||||||| | ||||||||| ||| |
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| T |
11025985 |
gctttattcatgatcttactcaaggtttagataaaatgtttgctcgtgcagttaaatgtgtctttctcagcgattcaagagtttagaaaggatataagtg |
11025886 |
T |
|
| Q |
234 |
ttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttctttacgtcttccattgagtctgagtctatctct |
333 |
Q |
| |
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|||||||| || || ||| | |||||||||| || ||||||||||||||||||||||||||| |||||| ||| |||||| ||| ||||| | ||| |
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| T |
11025885 |
ctattgtccatcaacgcatagcttctacatgtttgttgatgtcacattctttgaggatacaccactctttatatctcccattgtgtccgagtccaagtct |
11025786 |
T |
|
| Q |
334 |
caagtattaccaattcctttccttgtcccggtaattccacccacgcctgtcattgatcagtcaactccatcctcttctacg |
414 |
Q |
| |
|
|| | |||||| ||||||| |||||| |||||||| | || ||||||||||||||||| ||||||| ||| ||||| |
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|
| T |
11025785 |
cagggattacctattccttcccttgttttggtaattcaatagacatctgtcattgatcagtcagctccatcttctcctacg |
11025705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 36999112 - 36999206
Alignment:
| Q |
211 |
agagttcaaaaaggatatcggtgttattgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttctttac |
305 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || ||||||||||| || | | ||| ||||| || |||||||||||||||||||||||||| |
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| T |
36999112 |
agagttcaaaaagggtaccggtgttattgtccatctacacatcgtttttatgtttatgcagatgttactttctttgaggatacacctttctttac |
36999206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 43735111 - 43735278
Alignment:
| Q |
136 |
tttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggatatcggtgtt |
235 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||| ||| || || | |||||||| ||| | |||||||| ||| ||||| || |||||||||| |
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|
| T |
43735111 |
tttgttcatgatctcactcctggtcgcgataaattgtctgcacgagctgtcaaatgtgtgtttttgggctattctagaacccaaaaggggtatcggtgtt |
43735210 |
T |
|
| Q |
236 |
attgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttcttt |
303 |
Q |
| |
|
||| ||| || |||| ||| || || || || || ||||| || ||||| ||||||||||| |||||| |
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|
| T |
43735211 |
attctccatctacacgtcgcttttatatttcagcagatgttactttcttcgaggatacaccattcttt |
43735278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 6998907 - 6999074
Alignment:
| Q |
136 |
tttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggatatcggtgtt |
235 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||| ||| || || | |||||||| ||| | ||||||| ||| ||||| || ||||| |||| |
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|
| T |
6998907 |
tttgttcatgatctcactcctggttgcgataaattgtctgcacgagctgtcaaatgtgtttttttgggctattttagaacccaaaagggttatcgatgtt |
6999006 |
T |
|
| Q |
236 |
attgtccctccacacatcgtttctacatgtctgctgatgtcacattctttgaggatacacctttcttt |
303 |
Q |
| |
|
||| ||| || |||||||| || || || || || ||||| || ||||||||||||| ||| |||||| |
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|
| T |
6999007 |
attctccatctacacatcgcttttatatttcagcagatgttactttctttgaggatataccattcttt |
6999074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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