View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_high_6 (Length: 299)
Name: NF12355_high_6
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 28231740 - 28231999
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataag |
117 |
Q |
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| T |
28231740 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataag |
28231839 |
T |
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| Q |
118 |
attgcacaaaaggtcgaaacgttgctactttccaaacctagcatgcttactgttaattatgattgaacaac-aacaaactatttaaagtgggcgtgtttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28231840 |
attgcacaaaaggtcgaaacgttgctactttccaaacctagcatgcttactgttaattatgattgaacaacaaacaaactatttaaagtgggcgtgtttg |
28231939 |
T |
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| Q |
217 |
gtgaaacatcgaaagacaagttggttgcattctagttgatgatgctgaaacaataaggag |
276 |
Q |
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| T |
28231940 |
gtgaaacatccaaagacaagttggttgcattctagttgatgatgctgaaacaataaggag |
28231999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 28239433 - 28239678
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataag |
117 |
Q |
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| T |
28239433 |
gataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttatgaataag |
28239532 |
T |
|
| Q |
118 |
attgcacaaaaggtcgaaacgttgctactttccaaacctagcatgcttactgttaatt---atgattgaacaacaacaaactatttaaagtgggcgtgtt |
214 |
Q |
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| T |
28239533 |
attgaaaaaaaggtcaaaaaactgctactttccgtaccttacgagtttaacggtatttcttatgattgaactacaacaaactatttatagtgggattgtt |
28239632 |
T |
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| Q |
215 |
tggtgaaacatcgaaagacaagttggttgcattctagttgatgatg |
260 |
Q |
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| T |
28239633 |
tggtaaaacatcgaaagacaagttggttgtgttccagttgatgatg |
28239678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 47569524 - 47569570
Alignment:
| Q |
175 |
tatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa |
221 |
Q |
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| T |
47569524 |
tatgattgaacaacaacaaactatttaaagtgggcttgtttggtgaa |
47569570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 47569367 - 47569488
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataag |
117 |
Q |
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| T |
47569367 |
gataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggtagactata------cgaagagggagcaagaagtgttgttatgaataac |
47569460 |
T |
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| Q |
118 |
attgcacaaaaggtcgaaacgttgctac |
145 |
Q |
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|||||||||| ||| |||| |||||||| |
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| T |
47569461 |
attgcacaaagggtggaaaagttgctac |
47569488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 14508655 - 14508592
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaa |
81 |
Q |
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| T |
14508655 |
gataaaaggtggtgtcaaacctattgttgctagttttcactcggtgattgatgaactatacaaa |
14508592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 6326576 - 6326514
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaa |
80 |
Q |
| |
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||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||| |
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| T |
6326576 |
gataaaaggcggtctcaaacctaatgttgctagttatcactcagttgctgatggaatatacaa |
6326514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 24621454 - 24621422
Alignment:
| Q |
175 |
tatgattgaacaacaacaaactatttaaagtgg |
207 |
Q |
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| T |
24621454 |
tatgattgaacaacaacaaactatttaaagtgg |
24621422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 28326565 - 28326616
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgat |
69 |
Q |
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| T |
28326565 |
gataaaaggtggtctcagacctaatgttgctagttatcactcggttattgat |
28326616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 16375428 - 16375535
Alignment:
| Q |
18 |
gataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaagaagtgttgtcatggataag |
117 |
Q |
| |
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|||||||||||||||||||||||| | | ||||||| ||||| |||| ||| ||||||||| |||| ||||||||||||||||| ||| |||| |
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| T |
16375428 |
gataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactataca------aagggggatcaagaagtgttgttatgattaag |
16375521 |
T |
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| Q |
118 |
attgcacaaaaggt |
131 |
Q |
| |
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||| |||||||||| |
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| T |
16375522 |
attacacaaaaggt |
16375535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 16375582 - 16375628
Alignment:
| Q |
175 |
tatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa |
221 |
Q |
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||||||||||||| || ||||||||||||||| || ||||||||||| |
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| T |
16375582 |
tatgattgaacaataaaaaactatttaaagtgagcttgtttggtgaa |
16375628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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