View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_high_9 (Length: 256)
Name: NF12355_high_9
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 13873632 - 13873396
Alignment:
| Q |
18 |
agtactgaagtcctcaccccgaaagaatgaaaagttgttctgaaatgcgaaaagtggaggtgagaacttagacatactttgtacaatttaactacggtag |
117 |
Q |
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| T |
13873632 |
agtactgaagtcctcaccccaaaagaatgaaaagttgttttgaaatgcgaaaagtggaggtgagaacttagacatactttgtacaatttaactacggtag |
13873533 |
T |
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| Q |
118 |
aatatatcaaaattgatatctactaatatacaattagtcacagtagaaaagatgatatatcgtagcattaattcatgtcattcggttaatatatttaaat |
217 |
Q |
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| T |
13873532 |
aatatatcaaaat--gtatctaccaatatacaattagtcacattagaaaagatgatatatcgtagaattaattcatgtcattcggttagtatatttaaat |
13873435 |
T |
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| Q |
218 |
tttagcatcatatgcatacataaattagacctacatatt |
256 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
13873434 |
gttagcatcatatgcatacataaattagacctaaatatt |
13873396 |
T |
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