View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_low_2 (Length: 512)
Name: NF12355_low_2
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 1113387 - 1112893
Alignment:
| Q |
19 |
cttctttggtccatggagnnnnnnnnatatctggatttaaatgattataccacctaaaagaaaaacaaaagtttcacttccaattttcaaagaaaaacat |
118 |
Q |
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| T |
1113387 |
cttctttggtccatggagttttttttatatctggatttaaatgattataccacctaaaagaaaaacaaatgttttacttccaattttcaaagaaaaacat |
1113288 |
T |
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| Q |
119 |
cctcaaaccactaaatgcaaatatcagtgtaagataagaattatgatggaatataacatttacctttctctacattgtttacctatgcgacctggtaagg |
218 |
Q |
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| T |
1113287 |
ccttaaaccactaaatgcaaatatcagtgtaagataagaattgtgattgaatataacatttacctttctctacattgtttacctatgcgacctggtaagg |
1113188 |
T |
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| Q |
219 |
actttgctacctgagaccaannnnnnnnccc-atttatcttaacaagctcacttagttgattatcttcctgcaaactccaaattcagcggttaattaaaa |
317 |
Q |
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| T |
1113187 |
actttgctacctgagaccaattttttttccctatttatcttaacaagctcacttagttgattatcttcctgcaaactccaaattcagtggttaattaaaa |
1113088 |
T |
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| Q |
318 |
gaacataatctccaaattcactggttaattaaaatagcataatctctaaattcagtgatataacttaatttttacctgttctgaccaaggtcctttgata |
417 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1113087 |
gagcataatctccaaattcactggttaattaaaatagcataatctctaaattcagtgatataacttaatttttacctgttctgaccaaggtcctttgata |
1112988 |
T |
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| Q |
418 |
agatcaggattcaaaaccttttgccaacgatgcagacattgaacatctgttctgccagtaacacatgcagctgcaagggataatgtggtcactaa |
512 |
Q |
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| T |
1112987 |
agatcaggattcaaaaccttttgccaacgatgcagacattgaacatctgttctgccagtaacacatgcagctgcaagggattatgtggtcactaa |
1112893 |
T |
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