View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_low_3 (Length: 471)
Name: NF12355_low_3
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 177191 - 176729
Alignment:
| Q |
1 |
tttggtggtggctttggttgtgttacccacggcatcaaggacatcagtgatctctcggacactttcaggctgataataggtaatgtcagtatacgtacca |
100 |
Q |
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| T |
177191 |
tttggtggtggctttggttgtgttacccacggcatcaaggacatcagtgatctctcggacactttcaggctgataataggtaatgtcagtatacgtacca |
177092 |
T |
|
| Q |
101 |
tgagaaatctcaaatataacagaacacagtatggaaaatatttgttctggtcagaactacctgctgactcatttctacaattcctccagcattatcagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177091 |
tgagaaatctcaaatataacagaacacagtatggaaaatatttgttctggccagaactacctgctgactcatttctacaattcctccagcattatcagct |
176992 |
T |
|
| Q |
201 |
atcgggccaaacatatccatggtaagaatataagcagcagtgctaagcattcccattgttgccacagctgtgccaaacagcccaccagttgggtttcctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
176991 |
atcgggccaaacatatccatggtaagaatataagcagcagtgctaagcattcccattgttgctacagctgtgccaaacagcccaccagttgggtttcctg |
176892 |
T |
|
| Q |
301 |
tttcatctattagtccagcagtctggcccagccagtaggctgagacaatcgccacactgatgacaaggactggaagaccagtagattccagccccaaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176891 |
tttcatctattagtccagcagtctggcccagccagtaggctgagacaatcgccacactgatgacaaggactggaagaccagtagattccagccccaaact |
176792 |
T |
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| Q |
401 |
aactccagcaattatgttagtcccatggccagtagagctagaaagggctaatgtgcgcacagg |
463 |
Q |
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| T |
176791 |
aactccagcaattatgttagtcccatggccagtagagctagaaagggctaatgtgcgcacagg |
176729 |
T |
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