View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12355_low_4 (Length: 451)
Name: NF12355_low_4
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 16815535 - 16815987
Alignment:
| Q |
1 |
tgtactagtataatgtgtagtgttaaatttggaatttacaaacctcccccacaagaaacagcgccgatttgggaacacggtagctcatatctccccgcgt |
100 |
Q |
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| T |
16815535 |
tgtactagtagtatgtttagttttaaatttggaatttacaaacctaacctacaagaaatagcgccgatttgggaacacggtagctcacatctcaccgcgt |
16815634 |
T |
|
| Q |
101 |
ggcagttcgtctctccaaattaatagtgcgtttggttttatgtttggaatttccaacccaatcctacaagcgatagtgtctgtttggaaacatgtagctt |
200 |
Q |
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| T |
16815635 |
ggtagctcgtctctccaaattaatagtgcgtttggtattatgtttggaatttccaacccaaacctacaagaaatagtgtctgtttggaaacatgtagctt |
16815734 |
T |
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| Q |
201 |
acctctcaacgcg-ggtatctcatt----------------cctcgaggtgacatcatnnnnnnngaaatcttaagaaacacatacttaagcttttgtta |
283 |
Q |
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| T |
16815735 |
acctctcacagcgaggtagctcattacttcaagatgaacttcctcgaagtgacatcataaaaaaagaaacccaaacaaacacatgcttaagcttttgtta |
16815834 |
T |
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| Q |
284 |
gatactttgtgatttcgttaaactcaacgtatccaaacatatactaatggtatgtttagttttaaaattattttcatataattgttatgcaggtatccac |
383 |
Q |
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| T |
16815835 |
gataccttgtgatttcgttaaactcaacgtatccaaacatatactagtggtatgtttagttttaaaattattttcatataattgttatgcaggtatccac |
16815934 |
T |
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| Q |
384 |
ctttcattgcccaaaataatcgccaaaaacaacaaatgataatgaatgtaagt |
436 |
Q |
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| T |
16815935 |
ctttcattgcccaaaataatcgccaaaaacaacaaatgataatgaatgtaagt |
16815987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 16815503 - 16815561
Alignment:
| Q |
291 |
tgtgatttcgttaaactcaacgtatccaaacatatactaatggtatgtttagttttaaa |
349 |
Q |
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| T |
16815503 |
tgtgatttcgtcaaactcaacatgtccaaacatgtactagtagtatgtttagttttaaa |
16815561 |
T |
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