View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12355_low_6 (Length: 440)
Name: NF12355_low_6
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12355_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 311
Target Start/End: Complemental strand, 4286482 - 4286173
Alignment:
| Q |
3 |
ttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtactg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4286482 |
ttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactg |
4286383 |
T |
|
| Q |
103 |
ttatgcccagtgaaaattgaacagacctctacttttatgtgannnnnnnn-gctaaggttatgccatgatgggccaagggaatgataacagagtcttgtc |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286382 |
ttatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtc |
4286283 |
T |
|
| Q |
202 |
ttaaatgaagagttagcttacttaattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4286282 |
ttaaatgaagagttagcttacttaattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattc |
4286183 |
T |
|
| Q |
302 |
tcagacgaat |
311 |
Q |
| |
|
||||| |||| |
|
|
| T |
4286182 |
tcagatgaat |
4286173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
| Q |
323 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
422 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
230 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
292 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University