View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12355_low_8 (Length: 292)

Name: NF12355_low_8
Description: NF12355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12355_low_8
NF12355_low_8
[»] chr2 (8 HSPs)
chr2 (99-289)||(27148915-27149105)
chr2 (186-266)||(27149432-27149512)
chr2 (186-266)||(2869832-2869914)
chr2 (186-252)||(8039955-8040019)
chr2 (186-251)||(31055938-31056001)
chr2 (186-251)||(34682472-34682535)
chr2 (186-251)||(10445582-10445646)
chr2 (186-251)||(14699132-14699199)
[»] chr7 (6 HSPs)
chr7 (186-289)||(3047109-3047215)
chr7 (186-251)||(9235693-9235758)
chr7 (19-59)||(15486334-15486374)
chr7 (186-289)||(28617363-28617467)
chr7 (186-251)||(4796805-4796871)
chr7 (186-251)||(29159699-29159762)
[»] chr4 (5 HSPs)
chr4 (186-251)||(38152576-38152641)
chr4 (186-266)||(37781743-37781822)
chr4 (186-251)||(25862160-25862223)
chr4 (186-251)||(54867078-54867143)
chr4 (183-247)||(39245893-39245956)
[»] chr8 (3 HSPs)
chr8 (185-262)||(5990698-5990771)
chr8 (186-251)||(6127115-6127179)
chr8 (197-249)||(7493210-7493261)
[»] scaffold0184 (1 HSPs)
scaffold0184 (186-247)||(29620-29681)
[»] scaffold0148 (1 HSPs)
scaffold0148 (186-251)||(10624-10688)
[»] scaffold0078 (1 HSPs)
scaffold0078 (186-247)||(43163-43224)
[»] chr5 (5 HSPs)
chr5 (183-244)||(42127545-42127606)
chr5 (186-251)||(19588642-19588705)
chr5 (191-265)||(34842485-34842558)
chr5 (186-251)||(11181970-11182035)
chr5 (186-234)||(3880211-3880259)
[»] chr3 (4 HSPs)
chr3 (186-252)||(27038185-27038249)
chr3 (186-251)||(40592911-40592974)
chr3 (183-251)||(3328481-3328547)
chr3 (183-251)||(48438110-48438176)
[»] chr1 (4 HSPs)
chr1 (183-250)||(19072823-19072889)
chr1 (183-250)||(19120713-19120779)
chr1 (186-251)||(775568-775631)
chr1 (186-251)||(40816870-40816934)
[»] chr6 (3 HSPs)
chr6 (186-251)||(10077303-10077366)
chr6 (186-251)||(22963595-22963659)
chr6 (186-251)||(23824734-23824798)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 27148915 - 27149105
Alignment:
Q  99 ttttagaaaatccattagttgttggaaatagtggaggcattgagcaatcctgtcatatttctttgtactactacactctcaaggtgttttgaatatgctt 198  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  27148915 ttttagaaaatccattagttgccggaaatagtggaggcattgagcaatcctgtcgtatttctttgtactactacactcttatggtgttttgaatatgctt 27149014  T
Q  199 gtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctctgctcc 289  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  27149015 gtggtgttgctttacaaatagatttagatctatgttattgttgttgttgcttgatgctactttactcattgattatcactttctttgctcc 27149105  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 27149432 - 27149512
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 266  Q
    |||||||||| || |||| |||||||||| ||||||||||| ||||||| ||||| ||||| ||||| |||||||||||||    
T  27149432 tttgaatatgtttatggtattgctttacacatagatttagaactattttgttgttattgttacttgaggctactttactca 27149512  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 2869832 - 2869914
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt--ttattgttgttgttgcttgatgctactttactca 266  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||  || |||||||||||| ||||||||||||||||||    
T  2869832 tttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttgttgttgtttgatgctactttactca 2869914  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 8040019 - 8039955
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttga 252  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  |||||||||||||||||    
T  8040019 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttga 8039955  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 31056001 - 31055938
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  31056001 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 31055938  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 34682472 - 34682535
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  34682472 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 34682535  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 10445582 - 10445646
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||| ||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  10445582 tttgattatgcttgtggttttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 10445646  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 14699132 - 14699199
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatct--attttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||   |||| ||||||||||||||||    
T  14699132 tttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttgttgttgttgcttg 14699199  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 3047215 - 3047109
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt---ttattgttgttgttgcttgatgctactttactcactgaatatcactttct 282  Q
    ||||| ||||||||||||||||||||||| | || |||||| |||||   |||||||||||||||||||| |  |||||||||| ||| |||||||||||    
T  3047215 tttgattatgcttgtggtgttgctttacacacagttttagaactattttgttattgttgttgttgcttgaggacactttactcattgattatcactttct 3047116  T
Q  283 ctgctcc 289  Q
     ||||||    
T  3047115 ttgctcc 3047109  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 9235693 - 9235758
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  9235693 tttgattatgcttgtggtgttgctctacatttagatttaggtctgtttttttgttgttgttgcttg 9235758  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 15486334 - 15486374
Alignment:
Q  19 gagcaacgtcggagcttggccggagaaagattaggttgccg 59  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  15486334 gagcaacgccggagcttggccggagaaagattaggttgccg 15486374  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 28617363 - 28617467
Alignment:
Q  186 tttgaatatgcttgtggtgttgcttt-acaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctct 284  Q
    |||||||||||||||||||||||||| ||    ||| |||| |||||||| ||||| ||||| ||||| ||||||||||||| ||| || ||||| || |    
T  28617363 tttgaatatgcttgtggtgttgcttttactctaagacttaggtctattttgttgttcttgtttcttgaggctactttactcattgattaccacttccttt 28617462  T
Q  285 gctcc 289  Q
    |||||    
T  28617463 gctcc 28617467  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 4796805 - 4796871
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatct-attttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||  |||| ||||||||||||||||    
T  4796805 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttttttttgttgttgttgcttg 4796871  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 29159762 - 29159699
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  29159762 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 29159699  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 38152576 - 38152641
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||||||||||||||||||||    
T  38152576 tttgattatgcttgtggtgttgctatacacttagatctaggtctgttttattgttgttgttgcttg 38152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 37781822 - 37781743
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 266  Q
    ||||||||||||||||||||||||| |||  ||||| ||| |||| ||| ||| |||||||| |||||| |||||||||||    
T  37781822 tttgaatatgcttgtggtgttgcttcacacttagatctaggtcta-tttgttgatgttgttgattgatgatactttactca 37781743  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 25862160 - 25862223
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  25862160 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 25862223  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 54867143 - 54867078
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| ||||||||||||||||    
T  54867143 tttgattatgcttgtggtgttgctctacacttagatctatgtctgtttttttgttgttgttgcttg 54867078  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 39245956 - 39245893
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 247  Q
    |||||||| ||||| |||||||||||| ||||  ||||||||| ||| |||| ||||||||||||    
T  39245956 tgttttgattatgcctgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttg 39245893  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 5990698 - 5990771
Alignment:
Q  185 ttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctacttta 262  Q
    ||||||||||||||||||| ||| | ||||  ||||||||| |||||||    |||||||||||||||||||||||||    
T  5990698 ttttgaatatgcttgtggttttgttctacacttagatttaggtctattt----gttgttgttgcttgatgctacttta 5990771  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 6127179 - 6127115
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  || ||||| |||| |||| ||||||||||||||||    
T  6127179 tttgattatgcttgtggtgttgctctacacttaaatttatatctgtttt-ttgttgttgttgcttg 6127115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 7493210 - 7493261
Alignment:
Q  197 ttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgct 249  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||||||||||||||    
T  7493210 ttgtggtgttgctctacacttagatttagatcta-tttgttgttgttgttgct 7493261  T

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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 29620 - 29681
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 247  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||||||||||    
T  29620 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttg 29681  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 10688 - 10624
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  10688 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 10624  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 43224 - 43163
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 247  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||||||||||    
T  43224 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttg 43163  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 42127545 - 42127606
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttg 244  Q
    |||||||| |||||||||||||||||| ||||| ||||||||  ||| |||| |||||||||    
T  42127545 tgttttgattatgcttgtggtgttgctctacaattagatttaagtctgttttgttgttgttg 42127606  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 19588705 - 19588642
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||  |||| ||||||||||||||||    
T  19588705 tttgattatgcttgtggtgttgctctacacttagatttaggtc--tttttttgttgttgttgcttg 19588642  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 34842558 - 34842485
Alignment:
Q  191 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactc 265  Q
    |||||||||||||||||||| |||  ||||| ||| | | ||| |||||||||| ||||||| ||||||||||||    
T  34842558 atatgcttgtggtgttgcttcacacttagatctaggtttgttt-attgttgttgctgcttgaggctactttactc 34842485  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 11181970 - 11182035
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||| ||||| ||||  ||||||||  ||| |||| ||||||||||||||||    
T  11181970 tttgattatgcttgtggtattgctctacacttagatttaagtctgtttttttgttgttgttgcttg 11182035  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 3880259 - 3880211
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttt 234  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||| ||||    
T  3880259 tttgattatgcttgtggtgttgctttacacttagatttaggtctgtttt 3880211  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 27038249 - 27038185
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttga 252  Q
    ||||| |||||||||||||||||| ||||  ||||| ||||||| |||  |||||||||||||||||    
T  27038249 tttgattatgcttgtggtgttgctctacacttagatctagatctgttt--ttgttgttgttgcttga 27038185  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 40592911 - 40592974
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  40592911 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 40592974  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 3328481 - 3328547
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||    
T  3328481 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttg 3328547  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 48438176 - 48438110
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    |||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||    
T  48438176 tgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttg 48438110  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 19072889 - 19072823
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgctt 250  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||    
T  19072889 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgctt 19072823  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 19120779 - 19120713
Alignment:
Q  183 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgctt 250  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||    
T  19120779 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgctt 19120713  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 775631 - 775568
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  775631 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 775568  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 40816870 - 40816934
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||| ||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  40816870 tttgattatgctcgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 40816934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 10077303 - 10077366
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  10077303 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 10077366  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 22963659 - 22963595
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||    
T  22963659 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttg 22963595  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23824734 - 23824798
Alignment:
Q  186 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 251  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||    
T  23824734 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttg 23824798  T

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