View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12356_high_30 (Length: 283)

Name: NF12356_high_30
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12356_high_30
NF12356_high_30
[»] chr5 (1 HSPs)
chr5 (51-270)||(34936656-34936889)
[»] chr1 (2 HSPs)
chr1 (109-215)||(17404622-17404728)
chr1 (114-204)||(32730188-32730278)
[»] chr7 (3 HSPs)
chr7 (114-205)||(18132650-18132741)
chr7 (114-205)||(18144437-18144528)
chr7 (66-107)||(29802043-29802084)
[»] chr2 (1 HSPs)
chr2 (63-102)||(20213787-20213826)
[»] chr3 (1 HSPs)
chr3 (63-107)||(53505105-53505149)
[»] chr8 (1 HSPs)
chr8 (66-107)||(18008986-18009027)
[»] chr6 (1 HSPs)
chr6 (63-107)||(2013467-2013511)
[»] chr4 (1 HSPs)
chr4 (63-107)||(54846172-54846216)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 34936656 - 34936889
Alignment:
Q  51 gtgggggtgtgtgagagtgtgagggagtgttctgctttgttacataacattgctttgta--------------caagtggaagtggttgcttgatcccaa 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||| ||    
T  34936656 gtgggggggtgtgagagtgtgagggagtgttctgctttgttacataacattgctttgtagagcatgttcttgacaagtggaagtggttgcttgatcctaa 34936755  T
Q  137 tcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatcttgctgatgacgttaggcacaagcatatctct 236  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  34936756 tcattgttactcagtgcgaggtgtctatcgcttttttactacgaccgatgaacatgtggttaggaatcttgttaatgacgttaggcacaagcatatctct 34936855  T
Q  237 tcgaaggtatctctgttcatgtggcttctccttc 270  Q
    |||||||||||||||||| |||||||||||||||    
T  34936856 tcgaaggtatctctgttcgtgtggcttctccttc 34936889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 17404622 - 17404728
Alignment:
Q  109 acaagtggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatcttgc 208  Q
    |||||||||| |||||||||||||    |||| |||||||||||||||  || |||| ||||||||||||||| |||| || | ||||||||||||| ||    
T  17404622 acaagtggaaatggttgcttgatctttttcatggttactcggtgcgaggcgtatatcacttttttactacgacagatgtacctatggttaggaatctcgc 17404721  T
Q  209 tgatgac 215  Q
    |||||||    
T  17404722 tgatgac 17404728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 32730188 - 32730278
Alignment:
Q  114 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatc 204  Q
    ||||| |||||||| ||||| | |||| ||||||||||||||| ||| ||||||||||||||||| || |||||||  |||||||||||||    
T  32730188 tggaaatggttgctcgatcctattcatggttactcggtgcgaggtgtatatcgcttttttactacaactgatgaacccgtggttaggaatc 32730278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 18132741 - 18132650
Alignment:
Q  114 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatct 205  Q
    ||||| |||||||| ||||| | |||  ||||||||||||||| |||||| |||||||||||  | || |||| || |||||||||||||||    
T  18132741 tggaaatggttgctcgatcctattcacggttactcggtgcgaggtgtctaccgcttttttacggcaacagatgtacctgtggttaggaatct 18132650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 18144528 - 18144437
Alignment:
Q  114 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatct 205  Q
    ||||| |||||||| ||||| | |||  ||||||||||||||| |||||| |||||||||||  | || |||| || |||||||||||||||    
T  18144528 tggaaatggttgctcgatcctattcacggttactcggtgcgaggtgtctaccgcttttttacggcaacagatgtacctgtggttaggaatct 18144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 29802043 - 29802084
Alignment:
Q  66 agtgtgagggagtgttctgctttgttacataacattgctttg 107  Q
    |||||||||||||||| |||||||||| ||||||||| ||||    
T  29802043 agtgtgagggagtgttatgctttgttaaataacattgttttg 29802084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 20213826 - 20213787
Alignment:
Q  63 gagagtgtgagggagtgttctgctttgttacataacattg 102  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  20213826 gagagtctgagggagtgttctgctttgttacataacattg 20213787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 53505105 - 53505149
Alignment:
Q  63 gagagtgtgagggagtgttctgctttgttacataacattgctttg 107  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||    
T  53505105 gagagtgtgagggagtgttgtgctttgttacttaacattgttttg 53505149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 18008986 - 18009027
Alignment:
Q  66 agtgtgagggagtgttctgctttgttacataacattgctttg 107  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  18008986 agtgtgcgggagtgctctgctttgttacataacattgttttg 18009027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 2013467 - 2013511
Alignment:
Q  63 gagagtgtgagggagtgttctgctttgttacataacattgctttg 107  Q
    |||||| ||||||||||||||| ||||||||||||| ||| ||||    
T  2013467 gagagtatgagggagtgttctgttttgttacataacgttgttttg 2013511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 54846216 - 54846172
Alignment:
Q  63 gagagtgtgagggagtgttctgctttgttacataacattgctttg 107  Q
    |||||||||||||||||||||| |||  |||||||||||| ||||    
T  54846216 gagagtgtgagggagtgttctgttttactacataacattgttttg 54846172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University