View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12356_high_33 (Length: 267)
Name: NF12356_high_33
Description: NF12356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12356_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 1237869 - 1237748
Alignment:
| Q |
107 |
atcactttacagatgagcaaagtgatggaagcaaaaggcagaaatttaacaagtttgaccaagaagcttgccaaaatgaacttgttaagatgtttgtagc |
206 |
Q |
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| T |
1237869 |
atcactttacagatgagcaaagtgatggaagcaaaaggcaaaaatctaacaagtttgaccaagaagcttgccaaaatgaacttgttaagatgtttgtagc |
1237770 |
T |
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| Q |
207 |
caacgacattcctatctcattt |
228 |
Q |
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| T |
1237769 |
caacgacattcctatctcattt |
1237748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 1237918 - 1237868
Alignment:
| Q |
11 |
cagagaatcagttttctactccaccatttggctctaacactacttgtgtat |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1237918 |
cagagaatcagttttctactccaccatttggctctaacactacttgtgtat |
1237868 |
T |
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